Analysis of interatomic Contacts of Structural Units in PDB entry:
5B48

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B48 entry

There are 4 chains in PDB entry 5B48 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 624
B	THR 5	VAL 304
C	ARG 2	ASN 624
D	ASN 17	VAL 304

There are 71 helices in PDB entry 5B48. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	29	Right-handed alpha
Helix 2	AA2	A	74	81	Right-handed alpha
Helix 3	AA3	A	93	95	Right-handed 310
Helix 4	AA4	A	106	115	Right-handed alpha
Helix 5	AA5	A	125	136	Right-handed alpha
Helix 6	AA6	A	144	152	Right-handed alpha
Helix 7	AA7	A	169	178	Right-handed alpha
Helix 8	AA8	A	182	192	Right-handed alpha
Helix 9	AA9	A	207	211	Right-handed alpha
Helix 10	AB1	A	234	245	Right-handed alpha
Helix 11	AB2	A	260	268	Right-handed alpha
Helix 12	AB3	A	293	307	Right-handed alpha
Helix 13	AB4	A	317	333	Right-handed alpha
Helix 14	AB5	A	360	366	Right-handed alpha
Helix 15	AB6	A	380	399	Right-handed alpha
Helix 16	AB7	A	408	412	Right-handed alpha
Helix 17	AB8	A	479	501	Right-handed alpha
Helix 18	AB9	A	502	505	Right-handed 310
Helix 19	AC1	A	524	534	Right-handed alpha
Helix 20	AC2	A	552	560	Right-handed alpha
Helix 21	AC3	A	575	586	Right-handed alpha
Helix 22	AC4	A	602	615	Right-handed alpha
Helix 23	AC5	B	16	32	Right-handed alpha
Helix 24	AC6	B	34	37	Right-handed 310
Helix 25	AC7	B	46	50	Right-handed 310
Helix 26	AC8	B	67	79	Right-handed alpha
Helix 27	AC9	B	90	95	Right-handed alpha
Helix 28	AD1	B	97	108	Right-handed alpha
Helix 29	AD2	B	151	160	Right-handed alpha
Helix 30	AD3	B	171	185	Right-handed alpha
Helix 31	AD4	B	215	219	Right-handed 310
Helix 32	AD5	B	228	230	Right-handed 310
Helix 33	AD6	B	231	244	Right-handed alpha
Helix 34	AD7	B	263	270	Right-handed alpha
Helix 35	AD8	B	272	276	Right-handed 310
Helix 36	AD9	B	279	283	Right-handed 310
Helix 37	AE1	B	295	301	Right-handed alpha
Helix 38	AE2	C	16	29	Right-handed alpha
Helix 39	AE3	C	73	81	Right-handed alpha
Helix 40	AE4	C	93	95	Right-handed 310
Helix 41	AE5	C	109	114	Right-handed alpha
Helix 42	AE6	C	127	135	Right-handed alpha
Helix 43	AE7	C	144	152	Right-handed alpha
Helix 44	AE8	C	168	180	Right-handed alpha
Helix 45	AE9	C	182	192	Right-handed alpha
Helix 46	AF1	C	210	214	Right-handed 310
Helix 47	AF2	C	234	246	Right-handed alpha
Helix 48	AF3	C	258	268	Right-handed alpha
Helix 49	AF4	C	293	306	Right-handed alpha
Helix 50	AF5	C	317	323	Right-handed alpha
Helix 51	AF6	C	323	333	Right-handed alpha
Helix 52	AF7	C	360	366	Right-handed alpha
Helix 53	AF8	C	380	399	Right-handed alpha
Helix 54	AF9	C	408	413	Right-handed alpha
Helix 55	AG1	C	479	501	Right-handed alpha
Helix 56	AG2	C	502	505	Right-handed 310
Helix 57	AG3	C	524	532	Right-handed alpha
Helix 58	AG4	C	552	560	Right-handed alpha
Helix 59	AG5	C	575	586	Right-handed alpha
Helix 60	AG6	C	602	615	Right-handed alpha
Helix 61	AG7	D	18	32	Right-handed alpha
Helix 62	AG8	D	34	36	Right-handed 310
Helix 63	AG9	D	67	79	Right-handed alpha
Helix 64	AH1	D	97	108	Right-handed alpha
Helix 65	AH2	D	151	160	Right-handed alpha
Helix 66	AH3	D	171	185	Right-handed alpha
Helix 67	AH4	D	217	219	Right-handed 310
Helix 68	AH5	D	228	230	Right-handed 310
Helix 69	AH6	D	231	244	Right-handed alpha
Helix 70	AH7	D	263	270	Right-handed alpha
Helix 71	AH8	D	295	301	Right-handed alpha

There are 16 sheets in PDB entry 5B48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	143	first strand
Strand 2	A	84	91	parallel
Strand 3	A	66	70	parallel
Strand 4	A	3	10	parallel
Strand 5	A	47	55	anti-parallel
Strand 6	A	32	38	anti-parallel
Strand 7	A	413	418	anti-parallel
Strand 8	A	229	233	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	290	first strand
Strand 2	A	247	252	parallel
Strand 3	A	310	316	parallel
Strand 4	A	337	345	parallel
Strand 5	A	351	355	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	290	first strand
Strand 2	A	247	252	parallel
Strand 3	A	310	316	parallel
Strand 4	A	337	345	parallel
Strand 5	A	401	407	parallel
Strand 6	A	374	377	parallel
Strand 7	A	547	549	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	274	first strand
Strand 2	A	281	285	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	466	first strand
Strand 2	D	59	62	parallel
Strand 3	D	38	42	parallel
Strand 4	D	83	89	parallel
Strand 5	D	112	116	parallel
Strand 6	D	189	194	parallel
Strand 7	D	163	168	parallel
Strand 8	D	250	258	anti-parallel
Strand 9	D	213	215	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	466	first strand
Strand 2	D	59	62	parallel
Strand 3	D	38	42	parallel
Strand 4	D	83	89	parallel
Strand 5	D	112	116	parallel
Strand 6	D	189	194	parallel
Strand 7	D	163	168	parallel
Strand 8	D	250	258	anti-parallel
Strand 9	D	225	226	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	511	first strand
Strand 2	A	541	545	anti-parallel
Strand 3	A	515	521	parallel
Strand 4	A	565	570	parallel
Strand 5	A	591	594	parallel
Strand 6	A	620	622	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	257	first strand
Strand 2	B	163	168	anti-parallel
Strand 3	B	188	194	parallel
Strand 4	B	111	117	parallel
Strand 5	B	84	89	parallel
Strand 6	B	39	42	parallel
Strand 7	B	59	62	parallel
Strand 8	C	464	466	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	127	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	287	first strand
Strand 2	B	290	291	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	143	first strand
Strand 2	C	84	91	parallel
Strand 3	C	66	71	parallel
Strand 4	C	3	10	parallel
Strand 5	C	47	55	anti-parallel
Strand 6	C	32	38	anti-parallel
Strand 7	C	414	418	anti-parallel
Strand 8	C	229	233	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	290	first strand
Strand 2	C	247	252	parallel
Strand 3	C	310	316	parallel
Strand 4	C	337	345	parallel
Strand 5	C	351	355	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	290	first strand
Strand 2	C	247	252	parallel
Strand 3	C	310	316	parallel
Strand 4	C	337	345	parallel
Strand 5	C	401	407	parallel
Strand 6	C	374	377	parallel
Strand 7	C	547	549	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	273	first strand
Strand 2	C	282	285	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	507	510	first strand
Strand 2	C	542	545	anti-parallel
Strand 3	C	519	521	parallel
Strand 4	C	567	570	parallel
Strand 5	C	591	594	parallel
Strand 6	C	620	622	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	287	first strand
Strand 2	D	290	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B48

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B48