Analysis of interatomic Contacts of Structural Units in PDB entry:
5B4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B4P entry

There are 4 chains in PDB entry 5B4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1SER 254
B
 SER 0GLN 71
C
 ALA -1THR 259
D
 SER 0GLN 71
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5B4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
15 26Right-handed alpha
Helix 3
AA3
A
36 43Right-handed alpha
Helix 4
AA4
A
77 82Right-handed 310
Helix 5
AA5
A
102 107Right-handed 310
Helix 6
AA6
A
223 232Right-handed alpha
Helix 7
AA7
B
1 11Right-handed alpha
Helix 8
AA8
B
15 27Right-handed alpha
Helix 9
AA9
B
33 40Right-handed alpha
Helix 10
AB1
B
44 64Right-handed alpha
Helix 11
AB2
C
9 13Right-handed alpha
Helix 12
AB3
C
15 27Right-handed alpha
Helix 13
AB4
C
36 43Right-handed alpha
Helix 14
AB5
C
58 62Right-handed 310
Helix 15
AB6
C
77 82Right-handed 310
Helix 16
AB7
C
224 233Right-handed alpha
Helix 17
AB8
C
239 243Right-handed 310
Helix 18
AB9
D
1 13Right-handed alpha
Helix 19
AC1
D
15 27Right-handed alpha
Helix 20
AC2
D
33 41Right-handed alpha
Helix 21
AC3
D
44 63Right-handed alpha
Helix 22
AC4
D
66 71Right-handed alpha
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There are 3 sheets in PDB entry 5B4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
67 75parallel
Strand 3
A
89 97parallel
Strand 4
A
112 114parallel
Strand 5
A
136 138parallel
Strand 6
A
160 162parallel
Strand 7
A
184 186parallel
Strand 8
A
209 210parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 8first strand
Strand 2
C
34 35anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 49first strand
Strand 2
C
67 75parallel
Strand 3
C
89 97parallel
Strand 4
C
112 114parallel
Strand 5
C
136 138parallel
Strand 6
C
160 162parallel
Strand 7
C
184 186parallel
Strand 8
C
208 210parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il