Analysis of interatomic Contacts of Structural Units in PDB entry:
5B4T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B4T entry

There is 1 chain in PDB entry 5B4T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 5B4T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
38 54Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
98 102Right-handed 310
Helix 5
AA5
A
103 115Right-handed alpha
Helix 6
AA6
A
115 133Right-handed alpha
Helix 7
AA7
A
142 146Right-handed 310
Helix 8
AA8
A
152 173Right-handed alpha
Helix 9
AA9
A
190 205Right-handed alpha
Helix 10
AB1
A
207 220Right-handed alpha
Helix 11
AB2
A
227 239Right-handed alpha
Helix 12
AB3
A
240 244Right-handed 310
Helix 13
AB4
A
256 260Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 5B4T.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
30 33parallel
Strand 3
A
6 9parallel
Strand 4
A
86 89parallel
Strand 5
A
135 140parallel
Strand 6
A
178 185parallel
Strand 7
A
250 253parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il