Analysis of interatomic Contacts of Structural Units in PDB entry:
5B53


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B53 entry

There is 1 chain in PDB entry 5B53 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2VAL 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5B53. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
11 13Right-handed 310
Helix 3
AA3
A
45 60Right-handed alpha
Helix 4
AA4
A
75 88Right-handed alpha
Helix 5
AA5
A
101 111Right-handed alpha
Helix 6
AA6
A
123 139Right-handed alpha
Helix 7
AA7
A
150 160Right-handed alpha
Helix 8
AA8
A
160 172Right-handed alpha
Helix 9
AA9
A
186 200Right-handed alpha
Helix 10
AB1
A
214 219Right-handed alpha
Helix 11
AB2
A
240 244Right-handed 310
Helix 12
AB3
A
251 265Right-handed alpha
Helix 13
AB4
A
270 288Right-handed alpha
Helix 14
AB5
A
300 304Right-handed 310
Helix 15
AB6
A
307 311Right-handed 310
Helix 16
AB7
A
320 322Right-handed 310
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There are 2 sheets in PDB entry 5B53. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
204 210parallel
Strand 3
A
178 182parallel
Strand 4
A
293 297parallel
Strand 5
A
28 36parallel
Strand 6
A
18 25anti-parallel
Strand 7
A
324 333anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
92 97parallel
Strand 3
A
114 118parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il