Analysis of interatomic Contacts of Structural Units in PDB entry:
5B55


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B55 entry

There are 66 chains in PDB entry 5B55 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3GLN 3
A
 MET 6MET 6
A
 TYR 8GLY 14
A
 THR 16TYR 25
A
 GLY 27VAL 34
A
 ASN 36LEU 54
A
 ALA 57GLU 59
A
 ASN 61ILE 63
A
 GLY 66ARG 104
A
 SER 106ALA 113
A
 ILE 115ARG 120
A
 GLU 122GLU 130
A
 THR 132THR 132
A
 GLU 134ALA 136
A
 ASN 138MET 169
A
 SER 171GLY 193
A
 ARG 195ILE 196
A
 GLU 198ALA 203
A
 ILE 205TYR 220
A
 VAL 222ALA 223
A
 HIS 225VAL 239
A
 LEU 241ASP 242
A
 LEU 244GLN 260
A
 LEU 262ALA 263
A
 CYS 265ASN 285
A
 LEU 287GLY 288
A
 ASP 290ASN 301
A
 TYR 304GLU 313
A
 VAL 315VAL 315
A
 GLU 317SER 321
A
 ASP 323LEU 326
A
 GLU 328ILE 329
A
 ASN 331ILE 336
B
 GLN 3GLN 3
B
 MET 6MET 6
B
 TYR 8GLY 14
B
 THR 16TYR 25
B
 GLY 27VAL 34
B
 ASN 36LEU 54
B
 ALA 57GLU 59
B
 ASN 61ILE 63
B
 GLY 66ARG 104
B
 SER 106ALA 113
B
 ILE 115ARG 120
B
 GLU 122GLU 130
B
 THR 132THR 132
B
 GLU 134ALA 136
B
 ASN 138MET 169
B
 SER 171GLY 193
B
 ARG 195ILE 196
B
 GLU 198ALA 203
B
 ILE 205TYR 220
B
 VAL 222ALA 223
B
 HIS 225VAL 239
B
 LEU 241ASP 242
B
 LEU 244GLN 260
B
 LEU 262ALA 263
B
 CYS 265ASN 285
B
 LEU 287GLY 288
B
 ASP 290ASN 301
B
 TYR 304GLU 313
B
 VAL 315VAL 315
B
 GLU 317SER 321
B
 ASP 323LEU 326
B
 GLU 328ILE 329
B
 ASN 331VAL 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5B55. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed alpha
Helix 2
AA2
A
11 13Right-handed 310
Helix 3
AA3
A
45 60Right-handed alpha
Helix 4
AA4
A
75 88Right-handed alpha
Helix 5
AA5
A
101 111Right-handed alpha
Helix 6
AA6
A
123 139Right-handed alpha
Helix 7
AA7
A
150 160Right-handed alpha
Helix 8
AA8
A
160 172Right-handed alpha
Helix 9
AA9
A
186 200Right-handed alpha
Helix 10
AB1
A
214 219Right-handed alpha
Helix 11
AB2
A
240 244Right-handed 310
Helix 12
AB3
A
251 265Right-handed alpha
Helix 13
AB4
A
270 288Right-handed alpha
Helix 14
AB5
A
301 305Right-handed 310
Helix 15
AB6
A
307 311Right-handed 310
Helix 16
AB7
A
320 322Right-handed 310
Helix 17
AB8
B
4 10Right-handed alpha
Helix 18
AB9
B
11 13Right-handed 310
Helix 19
AC1
B
45 60Right-handed alpha
Helix 20
AC2
B
75 88Right-handed alpha
Helix 21
AC3
B
101 111Right-handed alpha
Helix 22
AC4
B
123 139Right-handed alpha
Helix 23
AC5
B
150 160Right-handed alpha
Helix 24
AC6
B
160 172Right-handed alpha
Helix 25
AC7
B
186 200Right-handed alpha
Helix 26
AC8
B
214 219Right-handed alpha
Helix 27
AC9
B
240 244Right-handed 310
Helix 28
AD1
B
251 265Right-handed alpha
Helix 29
AD2
B
270 288Right-handed alpha
Helix 30
AD3
B
301 305Right-handed 310
Helix 31
AD4
B
307 311Right-handed 310
Helix 32
AD5
B
320 322Right-handed 310
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There are 4 sheets in PDB entry 5B55. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
204 210parallel
Strand 3
A
178 182parallel
Strand 4
A
293 297parallel
Strand 5
A
28 36parallel
Strand 6
A
18 25anti-parallel
Strand 7
A
324 333anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
92 97parallel
Strand 3
A
114 118parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
204 210parallel
Strand 3
B
178 182parallel
Strand 4
B
293 297parallel
Strand 5
B
28 36parallel
Strand 6
B
18 25anti-parallel
Strand 7
B
324 333anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
92 97parallel
Strand 3
B
114 118parallel
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