Analysis of interatomic Contacts of Structural Units in PDB entry:
5B57


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B57 entry

There are 4 chains in PDB entry 5B57 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 24ALA 359
B
 SER 25GLY 358
C
 MET 1ALA 273
D
 MET 1ALA 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 5B57. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 50Right-handed alpha
Helix 2
AA2
A
56 65Right-handed alpha
Helix 3
AA3
A
67 69Right-handed 310
Helix 4
AA4
A
70 80Right-handed alpha
Helix 5
AA5
A
81 106Right-handed alpha
Helix 6
AA6
A
112 116Right-handed 310
Helix 7
AA7
A
117 132Right-handed alpha
Helix 8
AA8
A
144 166Right-handed alpha
Helix 9
AA9
A
172 198Right-handed alpha
Helix 10
AB1
A
199 212Right-handed alpha
Helix 11
AB2
A
218 238Right-handed alpha
Helix 12
AB3
A
239 247Right-handed alpha
Helix 13
AB4
A
249 256Right-handed alpha
Helix 14
AB5
A
259 283Right-handed alpha
Helix 15
AB6
A
287 301Right-handed alpha
Helix 16
AB7
A
303 330Right-handed alpha
Helix 17
AB8
A
336 356Right-handed alpha
Helix 18
AB9
B
29 49Right-handed alpha
Helix 19
AC1
B
56 66Right-handed alpha
Helix 20
AC2
B
67 69Right-handed 310
Helix 21
AC3
B
70 80Right-handed alpha
Helix 22
AC4
B
80 107Right-handed alpha
Helix 23
AC5
B
112 116Right-handed 310
Helix 24
AC6
B
117 132Right-handed alpha
Helix 25
AC7
B
144 166Right-handed alpha
Helix 26
AC8
B
172 198Right-handed alpha
Helix 27
AC9
B
199 212Right-handed alpha
Helix 28
AD1
B
218 238Right-handed alpha
Helix 29
AD2
B
239 247Right-handed alpha
Helix 30
AD3
B
249 256Right-handed alpha
Helix 31
AD4
B
259 283Right-handed alpha
Helix 32
AD5
B
287 301Right-handed alpha
Helix 33
AD6
B
303 329Right-handed alpha
Helix 34
AD7
B
336 356Right-handed alpha
Helix 35
AD8
C
39 49Right-handed alpha
Helix 36
AD9
C
74 76Right-handed 310
Helix 37
AE1
C
77 84Right-handed alpha
Helix 38
AE2
C
99 107Right-handed alpha
Helix 39
AE3
C
119 133Right-handed alpha
Helix 40
AE4
C
135 139Right-handed 310
Helix 41
AE5
C
142 146Right-handed 310
Helix 42
AE6
C
147 164Right-handed alpha
Helix 43
AE7
C
187 206Right-handed alpha
Helix 44
AE8
C
215 223Right-handed alpha
Helix 45
AE9
C
239 244Right-handed alpha
Helix 46
AF1
C
245 254Right-handed alpha
Helix 47
AF2
D
39 49Right-handed alpha
Helix 48
AF3
D
74 76Right-handed 310
Helix 49
AF4
D
77 82Right-handed alpha
Helix 50
AF5
D
99 108Right-handed alpha
Helix 51
AF6
D
120 133Right-handed alpha
Helix 52
AF7
D
142 146Right-handed 310
Helix 53
AF8
D
147 164Right-handed alpha
Helix 54
AF9
D
187 205Right-handed alpha
Helix 55
AG1
D
215 223Right-handed alpha
Helix 56
AG2
D
239 244Right-handed alpha
Helix 57
AG3
D
245 254Right-handed alpha
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There are 6 sheets in PDB entry 5B57. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 24first strand
Strand 2
C
2 9anti-parallel
Strand 3
C
62 68anti-parallel
Strand 4
C
71 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 88first strand
Strand 2
C
176 180parallel
Strand 3
C
208 212parallel
Strand 4
C
29 33parallel
Strand 5
C
225 230parallel
Strand 6
C
233 238anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 260first strand
Strand 2
C
269 272anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 24first strand
Strand 2
D
2 9anti-parallel
Strand 3
D
62 68anti-parallel
Strand 4
D
71 72anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 88first strand
Strand 2
D
176 179parallel
Strand 3
D
208 212parallel
Strand 4
D
29 34parallel
Strand 5
D
225 230parallel
Strand 6
D
233 238anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
258 260first strand
Strand 2
D
269 271anti-parallel
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