Analysis of interatomic Contacts of Structural Units in PDB entry:
5B58

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B58 entry

There are 5 chains in PDB entry 5B58 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 22	ALA 359
B	LEU 22	ALA 359
C	MET 1	ALA 273
D	MET 1	ALA 273
T	ARG 41	ILE 243

There are 73 helices in PDB entry 5B58. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	49	Right-handed alpha
Helix 2	AA2	A	56	65	Right-handed alpha
Helix 3	AA3	A	67	69	Right-handed 310
Helix 4	AA4	A	70	80	Right-handed alpha
Helix 5	AA5	A	80	106	Right-handed alpha
Helix 6	AA6	A	112	116	Right-handed 310
Helix 7	AA7	A	117	128	Right-handed alpha
Helix 8	AA8	A	146	166	Right-handed alpha
Helix 9	AA9	A	172	198	Right-handed alpha
Helix 10	AB1	A	199	212	Right-handed alpha
Helix 11	AB2	A	218	245	Right-handed alpha
Helix 12	AB3	A	249	256	Right-handed alpha
Helix 13	AB4	A	259	283	Right-handed alpha
Helix 14	AB5	A	287	300	Right-handed alpha
Helix 15	AB6	A	303	329	Right-handed alpha
Helix 16	AB7	A	336	341	Right-handed alpha
Helix 17	AB8	A	341	346	Right-handed alpha
Helix 18	AB9	A	346	355	Right-handed alpha
Helix 19	AC1	B	28	49	Right-handed alpha
Helix 20	AC2	B	56	58	Right-handed 310
Helix 21	AC3	B	59	65	Right-handed alpha
Helix 22	AC4	B	73	78	Right-handed alpha
Helix 23	AC5	B	80	106	Right-handed alpha
Helix 24	AC6	B	112	116	Right-handed 310
Helix 25	AC7	B	117	132	Right-handed alpha
Helix 26	AC8	B	145	166	Right-handed alpha
Helix 27	AC9	B	172	198	Right-handed alpha
Helix 28	AD1	B	199	212	Right-handed alpha
Helix 29	AD2	B	218	239	Right-handed alpha
Helix 30	AD3	B	239	247	Right-handed alpha
Helix 31	AD4	B	251	256	Right-handed alpha
Helix 32	AD5	B	259	283	Right-handed alpha
Helix 33	AD6	B	287	300	Right-handed alpha
Helix 34	AD7	B	303	327	Right-handed alpha
Helix 35	AD8	B	336	355	Right-handed alpha
Helix 36	AD9	C	39	48	Right-handed alpha
Helix 37	AE1	C	49	54	Right-handed alpha
Helix 38	AE2	C	77	82	Right-handed alpha
Helix 39	AE3	C	99	106	Right-handed alpha
Helix 40	AE4	C	107	109	Right-handed 310
Helix 41	AE5	C	120	133	Right-handed alpha
Helix 42	AE6	C	135	139	Right-handed 310
Helix 43	AE7	C	142	146	Right-handed 310
Helix 44	AE8	C	147	164	Right-handed alpha
Helix 45	AE9	C	187	205	Right-handed alpha
Helix 46	AF1	C	215	223	Right-handed alpha
Helix 47	AF2	C	239	244	Right-handed alpha
Helix 48	AF3	C	245	254	Right-handed alpha
Helix 49	AF4	D	39	49	Right-handed alpha
Helix 50	AF5	D	77	84	Right-handed alpha
Helix 51	AF6	D	99	106	Right-handed alpha
Helix 52	AF7	D	107	109	Right-handed 310
Helix 53	AF8	D	120	133	Right-handed alpha
Helix 54	AF9	D	135	139	Right-handed 310
Helix 55	AG1	D	142	146	Right-handed 310
Helix 56	AG2	D	147	163	Right-handed alpha
Helix 57	AG3	D	187	205	Right-handed alpha
Helix 58	AG4	D	215	223	Right-handed alpha
Helix 59	AG5	D	239	244	Right-handed alpha
Helix 60	AG6	D	245	254	Right-handed alpha
Helix 61	AG7	T	46	58	Right-handed alpha
Helix 62	AG8	T	76	82	Right-handed alpha
Helix 63	AG9	T	92	99	Right-handed alpha
Helix 64	AH1	T	112	121	Right-handed alpha
Helix 65	AH2	T	134	149	Right-handed alpha
Helix 66	AH3	T	151	176	Right-handed alpha
Helix 67	AH4	T	204	213	Right-handed alpha
Helix 68	AH5	T	229	237	Right-handed alpha
Helix 69	AH6	T	245	252	Right-handed alpha
Helix 70	AH7	T	253	259	Right-handed alpha
Helix 71	AH8	T	266	272	Right-handed alpha
Helix 72	AH9	T	278	284	Right-handed alpha
Helix 73	AI1	T	288	304	Right-handed alpha

There are 9 sheets in PDB entry 5B58. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	24	first strand
Strand 2	C	2	10	anti-parallel
Strand 3	C	61	68	anti-parallel
Strand 4	C	71	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	89	first strand
Strand 2	C	176	180	parallel
Strand 3	C	208	212	parallel
Strand 4	C	29	33	parallel
Strand 5	C	225	230	parallel
Strand 6	C	233	238	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	260	first strand
Strand 2	C	269	272	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	24	first strand
Strand 2	D	2	9	anti-parallel
Strand 3	D	62	68	anti-parallel
Strand 4	D	71	72	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	88	first strand
Strand 2	D	176	179	parallel
Strand 3	D	208	212	parallel
Strand 4	D	29	34	parallel
Strand 5	D	225	230	parallel
Strand 6	D	233	238	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	260	first strand
Strand 2	D	269	272	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	66	68	first strand
Strand 2	T	42	45	parallel
Strand 3	T	103	106	parallel
Strand 4	T	125	128	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	216	217	first strand
Strand 2	T	185	193	parallel
Strand 3	T	196	200	anti-parallel
Strand 4	T	225	227	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	216	217	first strand
Strand 2	T	185	193	parallel
Strand 3	T	240	244	parallel
Strand 4	T	274	277	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B58

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B58