Analysis of interatomic Contacts of Structural Units in PDB entry:
5B5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B5B entry

There are 4 chains in PDB entry 5B5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 114ASN 420
C
 LYS 625LYS 635
D
 LYS 123ASN 420
F
 LYS 625LYS 635
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5B5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
114 121Right-handed alpha
Helix 2
AA2
A
125 143Right-handed alpha
Helix 3
AA3
A
147 153Right-handed 310
Helix 4
AA4
A
222 244Right-handed alpha
Helix 5
AA5
A
246 250Right-handed 310
Helix 6
AA6
A
251 271Right-handed alpha
Helix 7
AA7
A
292 297Right-handed alpha
Helix 8
AA8
A
305 320Right-handed alpha
Helix 9
AA9
A
322 335Right-handed alpha
Helix 10
AB1
A
344 367Right-handed alpha
Helix 11
AB2
A
374 402Right-handed alpha
Helix 12
AB3
A
403 408Right-handed alpha
Helix 13
AB4
A
411 419Right-handed alpha
Helix 14
AB5
C
627 635Right-handed alpha
Helix 15
AB6
D
125 143Right-handed alpha
Helix 16
AB7
D
147 153Right-handed 310
Helix 17
AB8
D
222 243Right-handed alpha
Helix 18
AB9
D
246 250Right-handed 310
Helix 19
AC1
D
251 271Right-handed alpha
Helix 20
AC2
D
292 298Right-handed alpha
Helix 21
AC3
D
305 320Right-handed alpha
Helix 22
AC4
D
322 335Right-handed alpha
Helix 23
AC5
D
344 367Right-handed alpha
Helix 24
AC6
D
374 402Right-handed alpha
Helix 25
AC7
D
403 408Right-handed alpha
Helix 26
AC8
D
411 419Right-handed alpha
Helix 27
AC9
F
627 635Right-handed alpha
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There are 2 sheets in PDB entry 5B5B. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
281 283anti-parallel
Strand 3
A
290 291anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
275 276first strand
Strand 2
D
281 283anti-parallel
Strand 3
D
290 291anti-parallel
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