Analysis of interatomic Contacts of Structural Units in PDB entry:
5B5H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B5H entry

There is 1 chain in PDB entry 5B5H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5B5H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 14Right-handed 310
Helix 2
AA2
A
40 42Right-handed 310
Helix 3
AA3
A
75 96Right-handed alpha
Helix 4
AA4
A
105 109Right-handed 310
Helix 5
AA5
A
165 167Right-handed 310
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There are 5 sheets in PDB entry 5B5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
29 31parallel
Strand 3
A
219 222parallel
Strand 4
A
202 209parallel
Strand 5
A
16 18parallel
Strand 6
A
34 36parallel
Strand 7
A
67 69parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
29 31parallel
Strand 3
A
219 222parallel
Strand 4
A
202 209parallel
Strand 5
A
184 191parallel
Strand 6
A
169 173parallel
Strand 7
A
142 146parallel
Strand 8
A
118 122parallel
Strand 9
A
102 103parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
22 25parallel
Strand 3
A
213 216parallel
Strand 4
A
195 197parallel
Strand 5
A
177 179parallel
Strand 6
A
150 152parallel
Strand 7
A
126 128parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
58 59anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
132 135parallel
Strand 3
A
158 161parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il