Analysis of interatomic Contacts of Structural Units in PDB entry:
5B5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B5Q entry

There are 2 chains in PDB entry 5B5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 159ALA 401
B
 GLY 153ALA 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5B5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
167 182Right-handed alpha
Helix 2
AA2
A
198 215Right-handed alpha
Helix 3
AA3
A
228 239Right-handed alpha
Helix 4
AA4
A
254 269Right-handed alpha
Helix 5
AA5
A
300 319Right-handed alpha
Helix 6
AA6
A
344 359Right-handed alpha
Helix 7
AA7
A
363 368Right-handed 310
Helix 8
AA8
A
371 390Right-handed alpha
Helix 9
AA9
B
167 182Right-handed alpha
Helix 10
AB1
B
198 215Right-handed alpha
Helix 11
AB2
B
228 239Right-handed alpha
Helix 12
AB3
B
254 269Right-handed alpha
Helix 13
AB4
B
300 319Right-handed alpha
Helix 14
AB5
B
344 359Right-handed alpha
Helix 15
AB6
B
364 368Right-handed 310
Helix 16
AB7
B
371 391Right-handed alpha
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There are 2 sheets in PDB entry 5B5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 248first strand
Strand 2
A
275 282anti-parallel
Strand 3
A
287 291anti-parallel
Strand 4
A
328 331parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 248first strand
Strand 2
B
275 282anti-parallel
Strand 3
B
287 291anti-parallel
Strand 4
B
328 331parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il