Analysis of interatomic Contacts of Structural Units in PDB entry:
5B5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B5R entry

There is 1 chain in PDB entry 5B5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 0ARG 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5B5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 16Right-handed alpha
Helix 2
AA2
A
29 34Right-handed 310
Helix 3
AA3
A
61 64Right-handed 310
Helix 4
AA4
A
81 83Right-handed 310
Helix 5
AA5
A
121 132Right-handed alpha
Helix 6
AA6
A
138 148Right-handed alpha
Helix 7
AA7
A
180 185Right-handed alpha
Helix 8
AA8
A
215 217Right-handed 310
Helix 9
AA9
A
266 283Right-handed alpha
Helix 10
AB1
A
285 301Right-handed alpha
Helix 11
AB2
A
302 320Right-handed alpha
Helix 12
AB3
A
335 350Right-handed alpha
Helix 13
AB4
A
353 367Right-handed alpha
Helix 14
AB5
A
368 384Right-handed alpha
Helix 15
AB6
A
395 399Right-handed 310
Helix 16
AB7
A
403 416Right-handed alpha
Helix 17
AB8
A
431 433Right-handed 310
Helix 18
AB9
A
434 453Right-handed alpha
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There are 6 sheets in PDB entry 5B5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
203 210anti-parallel
Strand 3
A
152 160anti-parallel
Strand 4
A
37 41anti-parallel
Strand 5
A
53 59anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
203 210anti-parallel
Strand 3
A
152 160anti-parallel
Strand 4
A
112 120anti-parallel
Strand 5
A
85 94anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
164 168anti-parallel
Strand 3
A
195 198anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
219 220anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
246 247anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 393first strand
Strand 2
A
427 430anti-parallel
Strand 3
A
420 422anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il