Analysis of interatomic Contacts of Structural Units in PDB entry:
5B5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B5T entry

There are 4 chains in PDB entry 5B5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 39GLU 387
B
 THR 391TYR 580
C
 ASP 39GLU 387
D
 THR 391TYR 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5B5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 68Right-handed alpha
Helix 2
AA2
A
71 87Right-handed alpha
Helix 3
AA3
A
134 140Right-handed alpha
Helix 4
AA4
A
141 145Right-handed 310
Helix 5
AA5
A
149 162Right-handed alpha
Helix 6
AA6
A
165 180Right-handed alpha
Helix 7
AA7
A
184 194Right-handed alpha
Helix 8
AA8
A
195 201Right-handed 310
Helix 9
AA9
A
202 209Right-handed alpha
Helix 10
AB1
A
224 238Right-handed alpha
Helix 11
AB2
A
239 244Right-handed alpha
Helix 12
AB3
A
245 258Right-handed alpha
Helix 13
AB4
A
263 270Right-handed alpha
Helix 14
AB5
A
295 308Right-handed alpha
Helix 15
AB6
A
311 316Right-handed alpha
Helix 16
AB7
A
319 341Right-handed alpha
Helix 17
AB8
A
350 355Right-handed alpha
Helix 18
AB9
A
356 365Right-handed alpha
Helix 19
AC1
A
374 378Right-handed 310
Helix 20
AC2
A
383 387Right-handed 310
Helix 21
AC3
B
420 424Right-handed 310
Helix 22
AC4
B
429 434Right-handed 310
Helix 23
AC5
B
483 485Right-handed 310
Helix 24
AC6
B
486 500Right-handed alpha
Helix 25
AC7
B
504 511Right-handed alpha
Helix 26
AC8
B
530 540Right-handed alpha
Helix 27
AC9
C
55 68Right-handed alpha
Helix 28
AD1
C
71 87Right-handed alpha
Helix 29
AD2
C
134 140Right-handed alpha
Helix 30
AD3
C
141 145Right-handed 310
Helix 31
AD4
C
149 162Right-handed alpha
Helix 32
AD5
C
165 180Right-handed alpha
Helix 33
AD6
C
184 194Right-handed alpha
Helix 34
AD7
C
195 201Right-handed 310
Helix 35
AD8
C
202 209Right-handed alpha
Helix 36
AD9
C
224 238Right-handed alpha
Helix 37
AE1
C
239 245Right-handed alpha
Helix 38
AE2
C
245 258Right-handed alpha
Helix 39
AE3
C
263 270Right-handed alpha
Helix 40
AE4
C
295 309Right-handed alpha
Helix 41
AE5
C
311 316Right-handed alpha
Helix 42
AE6
C
319 341Right-handed alpha
Helix 43
AE7
C
350 355Right-handed alpha
Helix 44
AE8
C
356 365Right-handed alpha
Helix 45
AE9
C
374 378Right-handed 310
Helix 46
AF1
C
383 387Right-handed 310
Helix 47
AF2
D
420 424Right-handed 310
Helix 48
AF3
D
429 434Right-handed 310
Helix 49
AF4
D
483 485Right-handed 310
Helix 50
AF5
D
486 500Right-handed alpha
Helix 51
AF6
D
504 511Right-handed alpha
Helix 52
AF7
D
530 540Right-handed alpha
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There are 10 sheets in PDB entry 5B5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
B
564 568anti-parallel
Strand 3
B
554 558anti-parallel
Strand 4
B
474 479anti-parallel
Strand 5
B
467 471anti-parallel
Strand 6
A
285 289anti-parallel
Strand 7
A
278 282anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
108 113anti-parallel
Strand 3
A
96 102anti-parallel
Strand 4
B
403 409anti-parallel
Strand 5
B
392 397anti-parallel
Strand 6
A
50 53anti-parallel
Strand 7
B
576 579anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
221 222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
214 215anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
514 515first strand
Strand 2
B
523 525anti-parallel
Strand 3
B
544 546parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 46first strand
Strand 2
D
564 568anti-parallel
Strand 3
D
554 558anti-parallel
Strand 4
D
474 479anti-parallel
Strand 5
D
467 471anti-parallel
Strand 6
C
285 289anti-parallel
Strand 7
C
278 282anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 275first strand
Strand 2
C
108 113anti-parallel
Strand 3
C
96 102anti-parallel
Strand 4
D
403 409anti-parallel
Strand 5
D
392 397anti-parallel
Strand 6
C
49 53anti-parallel
Strand 7
D
576 580anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 182first strand
Strand 2
C
221 222anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 211first strand
Strand 2
C
214 215anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
514 515first strand
Strand 2
D
523 525anti-parallel
Strand 3
D
544 546parallel
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