Analysis of interatomic Contacts of Structural Units in PDB entry:
5B5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B5Y entry

There are 2 chains in PDB entry 5B5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4MET 262
B
 ASN 2LEU 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5B5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 12Right-handed alpha
Helix 2
AA2
A
18 31Right-handed alpha
Helix 3
AA3
A
48 50Right-handed 310
Helix 4
AA4
A
51 63Right-handed alpha
Helix 5
AA5
A
70 74Right-handed 310
Helix 6
AA6
A
77 87Right-handed alpha
Helix 7
AA7
A
126 142Right-handed alpha
Helix 8
AA8
A
166 168Right-handed 310
Helix 9
AA9
A
169 180Right-handed alpha
Helix 10
AB1
A
182 189Right-handed alpha
Helix 11
AB2
A
191 215Right-handed alpha
Helix 12
AB3
A
216 219Right-handed 310
Helix 13
AB4
B
3 12Right-handed alpha
Helix 14
AB5
B
18 31Right-handed alpha
Helix 15
AB6
B
48 50Right-handed 310
Helix 16
AB7
B
51 63Right-handed alpha
Helix 17
AB8
B
70 74Right-handed 310
Helix 18
AB9
B
77 87Right-handed alpha
Helix 19
AC1
B
126 142Right-handed alpha
Helix 20
AC2
B
169 180Right-handed alpha
Helix 21
AC3
B
182 189Right-handed alpha
Helix 22
AC4
B
191 215Right-handed alpha
Helix 23
AC5
B
216 219Right-handed 310
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There are 4 sheets in PDB entry 5B5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
242 251anti-parallel
Strand 3
A
225 234anti-parallel
Strand 4
A
94 104parallel
Strand 5
A
39 44parallel
Strand 6
A
66 67parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
242 251anti-parallel
Strand 3
A
257 260anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
242 251anti-parallel
Strand 3
B
225 234anti-parallel
Strand 4
B
94 104parallel
Strand 5
B
39 44parallel
Strand 6
B
66 67parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
242 251anti-parallel
Strand 3
B
257 260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il