Analysis of interatomic Contacts of Structural Units in PDB entry:
5B64


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B64 entry

There are 2 chains in PDB entry 5B64 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 533SER 712
B
 ASN 680GLU 795
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5B64. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
543 555Right-handed alpha
Helix 2
AA2
A
585 595Right-handed alpha
Helix 3
AA3
A
613 622Right-handed alpha
Helix 4
AA4
A
632 641Right-handed alpha
Helix 5
AA5
A
654 662Right-handed alpha
Helix 6
AA6
A
666 685Right-handed alpha
Helix 7
AA7
A
686 688Right-handed 310
Helix 8
AA8
A
696 711Right-handed alpha
Helix 9
AA9
B
681 707Right-handed alpha
Helix 10
AB1
B
720 726Right-handed alpha
Helix 11
AB2
B
753 773Right-handed alpha
Helix 12
AB3
B
777 787Right-handed alpha
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There are 3 sheets in PDB entry 5B64. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 560first strand
Strand 2
A
625 628parallel
Strand 3
A
537 540parallel
Strand 4
A
646 650parallel
Strand 5
A
690 692parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 582first strand
Strand 2
A
565 566parallel
Strand 3
A
607 612anti-parallel
Strand 4
A
598 604anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
712 718first strand
Strand 2
B
736 743anti-parallel
Strand 3
B
747 752anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il