Analysis of interatomic Contacts of Structural Units in PDB entry:
5B6K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B6K entry

There is 1 chain in PDB entry 5B6K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 7LYS 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5B6K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
40 50Right-handed alpha
Helix 3
AA3
A
71 79Right-handed alpha
Helix 4
AA4
A
98 103Right-handed alpha
Helix 5
AA5
A
103 122Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
140 144Right-handed 310
Helix 8
AA8
A
149 153Right-handed 310
Helix 9
AA9
A
165 169Right-handed 310
Helix 10
AB1
A
170 194Right-handed alpha
Helix 11
AB2
A
227 235Right-handed alpha
Helix 12
AB3
A
252 265Right-handed alpha
Helix 13
AB4
A
266 269Right-handed 310
Helix 14
AB5
A
282 293Right-handed alpha
Helix 15
AB6
A
294 297Right-handed 310
Helix 16
AB7
A
309 313Right-handed 310
Helix 17
AB8
A
319 327Right-handed alpha
Helix 18
AB9
A
332 348Right-handed alpha
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There are 2 sheets in PDB entry 5B6K. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
33 38parallel
Strand 3
A
9 12parallel
Strand 4
A
82 87parallel
Strand 5
A
128 132parallel
Strand 6
A
200 206parallel
Strand 7
A
272 275parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
246 251parallel
Strand 3
A
278 281anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il