Analysis of interatomic Contacts of Structural Units in PDB entry:
5B6L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B6L entry

There are 2 chains in PDB entry 5B6L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 56ARG 390
U
 UNK 95TRP 99
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5B6L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 66Right-handed alpha
Helix 2
AA2
A
126 130Right-handed 310
Helix 3
AA3
A
178 182Right-handed 310
Helix 4
AA4
A
268 274Right-handed alpha
Helix 5
AA5
A
274 280Right-handed alpha
Helix 6
AA6
A
297 305Right-handed alpha
Helix 7
AA7
A
329 334Right-handed alpha
Helix 8
AA8
A
352 363Right-handed alpha
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There are 4 sheets in PDB entry 5B6L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
137 139anti-parallel
Strand 3
A
69 73anti-parallel
Strand 4
A
113 118anti-parallel
Strand 5
A
122 125anti-parallel
Strand 6
A
159 163anti-parallel
Strand 7
A
149 154anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 192first strand
Strand 2
A
200 209anti-parallel
Strand 3
A
226 228anti-parallel
Strand 4
A
263 267anti-parallel
Strand 5
A
248 253anti-parallel
Strand 6
A
240 242anti-parallel
Strand 7
A
187 192anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
387 388anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 296first strand
Strand 2
A
319 325anti-parallel
Strand 3
A
341 344anti-parallel
Strand 4
A
368 375anti-parallel
Strand 5
A
378 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il