Analysis of interatomic Contacts of Structural Units in PDB entry:
5B6T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B6T entry

There are 2 chains in PDB entry 5B6T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 82	ALA 398
B	LEU 82	ALA 398

There are 16 helices in PDB entry 5B6T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	140	144	Right-handed 310
Helix 2	AA2	A	153	155	Right-handed 310
Helix 3	AA3	A	171	174	Right-handed 310
Helix 4	AA4	A	195	199	Right-handed 310
Helix 5	AA5	A	210	217	Right-handed alpha
Helix 6	AA6	A	270	274	Right-handed 310
Helix 7	AA7	A	329	331	Right-handed 310
Helix 8	AA8	A	379	383	Right-handed 310
Helix 9	AA9	B	140	144	Right-handed 310
Helix 10	AB1	B	153	155	Right-handed 310
Helix 11	AB2	B	171	174	Right-handed 310
Helix 12	AB3	B	195	199	Right-handed 310
Helix 13	AB4	B	210	217	Right-handed alpha
Helix 14	AB5	B	270	274	Right-handed 310
Helix 15	AB6	B	329	331	Right-handed 310
Helix 16	AB7	B	379	383	Right-handed 310

There are 11 sheets in PDB entry 5B6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	88	90	parallel
Strand 3	A	386	392	anti-parallel
Strand 4	A	366	371	anti-parallel
Strand 5	A	345	349	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	115	first strand
Strand 2	A	118	127	anti-parallel
Strand 3	A	130	138	anti-parallel
Strand 4	A	149	151	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	170	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	185	190	anti-parallel
Strand 4	A	203	204	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	229	first strand
Strand 2	A	233	239	anti-parallel
Strand 3	A	244	251	anti-parallel
Strand 4	A	263	267	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	318	first strand
Strand 2	A	302	309	anti-parallel
Strand 3	A	288	296	anti-parallel
Strand 4	A	276	283	anti-parallel
Strand 5	A	359	360	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	88	90	parallel
Strand 3	B	386	392	anti-parallel
Strand 4	B	366	371	anti-parallel
Strand 5	B	345	349	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	115	first strand
Strand 2	B	118	127	anti-parallel
Strand 3	B	130	138	anti-parallel
Strand 4	B	149	151	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	170	first strand
Strand 2	B	175	181	anti-parallel
Strand 3	B	185	190	anti-parallel
Strand 4	B	203	204	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	229	first strand
Strand 2	B	233	239	anti-parallel
Strand 3	B	244	251	anti-parallel
Strand 4	B	263	267	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	318	first strand
Strand 2	B	302	309	anti-parallel
Strand 3	B	289	296	anti-parallel
Strand 4	B	276	283	anti-parallel
Strand 5	B	359	360	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	325	326	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B6T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B6T