Analysis of interatomic Contacts of Structural Units in PDB entry:
5B7I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B7I entry

There are 3 chains in PDB entry 5B7I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ASN 1076
B
 ASP -1TYR 135
C
 MSE 1GLN 138
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 5B7I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 25Right-handed alpha
Helix 2
AA2
A
38 52Right-handed alpha
Helix 3
AA3
A
108 123Right-handed alpha
Helix 4
AA4
A
124 128Right-handed 310
Helix 5
AA5
A
129 138Right-handed alpha
Helix 6
AA6
A
148 162Right-handed alpha
Helix 7
AA7
A
166 176Right-handed alpha
Helix 8
AA8
A
182 187Right-handed 310
Helix 9
AA9
A
207 219Right-handed alpha
Helix 10
AB1
A
230 237Right-handed alpha
Helix 11
AB2
A
242 246Right-handed 310
Helix 12
AB3
A
266 269Right-handed 310
Helix 13
AB4
A
270 286Right-handed alpha
Helix 14
AB5
A
289 299Right-handed alpha
Helix 15
AB6
A
300 321Right-handed alpha
Helix 16
AB7
A
348 367Right-handed alpha
Helix 17
AB8
A
369 374Right-handed alpha
Helix 18
AB9
A
380 385Right-handed alpha
Helix 19
AC1
A
392 413Right-handed alpha
Helix 20
AC2
A
425 438Right-handed alpha
Helix 21
AC3
A
456 468Right-handed alpha
Helix 22
AC4
A
531 539Right-handed alpha
Helix 23
AC5
A
546 550Right-handed alpha
Helix 24
AC6
A
550 555Right-handed alpha
Helix 25
AC7
A
561 571Right-handed alpha
Helix 26
AC8
A
578 581Right-handed 310
Helix 27
AC9
A
582 584Right-handed 310
Helix 28
AD1
A
585 599Right-handed alpha
Helix 29
AD2
A
611 632Right-handed alpha
Helix 30
AD3
A
659 680Right-handed alpha
Helix 31
AD4
A
698 721Right-handed alpha
Helix 32
AD5
A
739 753Right-handed alpha
Helix 33
AD6
A
771 786Right-handed alpha
Helix 34
AD7
A
792 799Right-handed alpha
Helix 35
AD8
A
799 809Right-handed alpha
Helix 36
AD9
A
822 825Right-handed 310
Helix 37
AE1
A
841 850Right-handed alpha
Helix 38
AE2
A
871 876Right-handed alpha
Helix 39
AE3
A
898 903Right-handed alpha
Helix 40
AE4
A
904 908Right-handed 310
Helix 41
AE5
A
913 918Right-handed alpha
Helix 42
AE6
A
928 941Right-handed alpha
Helix 43
AE7
A
954 959Right-handed alpha
Helix 44
AE8
A
960 964Right-handed 310
Helix 45
AE9
A
965 971Right-handed alpha
Helix 46
AF1
A
1029 1041Right-handed alpha
Helix 47
AF2
A
1044 1053Right-handed alpha
Helix 48
AF3
B
3 11Right-handed alpha
Helix 49
AF4
B
13 24Right-handed alpha
Helix 50
AF5
B
33 57Right-handed alpha
Helix 51
AF6
B
65 80Right-handed alpha
Helix 52
AF7
B
94 111Right-handed alpha
Helix 53
AF8
B
116 131Right-handed alpha
Helix 54
AF9
C
3 11Right-handed alpha
Helix 55
AG1
C
13 25Right-handed alpha
Helix 56
AG2
C
28 32Right-handed 310
Helix 57
AG3
C
33 57Right-handed alpha
Helix 58
AG4
C
65 80Right-handed alpha
Helix 59
AG5
C
94 112Right-handed alpha
Helix 60
AG6
C
116 132Right-handed alpha
Helix 61
AG7
C
133 135Right-handed 310
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There are 6 sheets in PDB entry 5B7I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
1 7anti-parallel
Strand 3
A
58 64anti-parallel
Strand 4
A
70 77anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 513first strand
Strand 2
A
474 478anti-parallel
Strand 3
A
541 545parallel
Strand 4
A
446 450parallel
Strand 5
A
572 576parallel
Strand 6
A
603 606parallel
Strand 7
A
414 418parallel
Strand 8
A
642 647parallel
Strand 9
A
652 657anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 690first strand
Strand 2
A
865 868parallel
Strand 3
A
834 837parallel
Strand 4
A
728 736parallel
Strand 5
A
723 725anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 690first strand
Strand 2
A
865 868parallel
Strand 3
A
834 837parallel
Strand 4
A
728 736parallel
Strand 5
A
813 820parallel
Strand 6
A
759 766parallel
Strand 7
A
1022 1024parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
982 986first strand
Strand 2
A
994 999anti-parallel
Strand 3
A
1004 1006anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1011 1013first strand
Strand 2
A
1064 1067parallel
Strand 3
A
1071 1074anti-parallel
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