Analysis of interatomic Contacts of Structural Units in PDB entry:
5B7M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B7M entry

There are 3 chains in PDB entry 5B7M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 31	VAL 516
B	GLU 30	VAL 516
C	ARG 31	ALA 423

There are 30 helices in PDB entry 5B7M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	108	112	Right-handed 310
Helix 2	AA2	A	147	154	Right-handed alpha
Helix 3	AA3	A	164	169	Right-handed alpha
Helix 4	AA4	A	201	208	Right-handed alpha
Helix 5	AA5	A	356	372	Right-handed alpha
Helix 6	AA6	A	373	377	Right-handed 310
Helix 7	AA7	A	403	406	Right-handed 310
Helix 8	AA8	A	463	467	Right-handed 310
Helix 9	AA9	A	491	495	Right-handed 310
Helix 10	AB1	A	502	508	Right-handed alpha
Helix 11	AB2	B	108	112	Right-handed 310
Helix 12	AB3	B	147	155	Right-handed alpha
Helix 13	AB4	B	164	169	Right-handed alpha
Helix 14	AB5	B	201	208	Right-handed alpha
Helix 15	AB6	B	356	372	Right-handed alpha
Helix 16	AB7	B	373	377	Right-handed 310
Helix 17	AB8	B	403	406	Right-handed 310
Helix 18	AB9	B	463	467	Right-handed 310
Helix 19	AC1	B	491	495	Right-handed 310
Helix 20	AC2	B	502	508	Right-handed alpha
Helix 21	AC3	C	108	112	Right-handed 310
Helix 22	AC4	C	147	155	Right-handed alpha
Helix 23	AC5	C	164	169	Right-handed alpha
Helix 24	AC6	C	201	208	Right-handed alpha
Helix 25	AC7	C	356	372	Right-handed alpha
Helix 26	AC8	C	373	377	Right-handed 310
Helix 27	AC9	C	403	406	Right-handed 310
Helix 28	AD1	C	463	467	Right-handed 310
Helix 29	AD2	C	491	495	Right-handed 310
Helix 30	AD3	C	502	508	Right-handed alpha

There are 18 sheets in PDB entry 5B7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	77	81	parallel
Strand 3	A	158	163	parallel
Strand 4	A	136	141	anti-parallel
Strand 5	A	101	103	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	69	first strand
Strand 2	A	47	59	anti-parallel
Strand 3	A	86	92	parallel
Strand 4	A	124	129	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	216	first strand
Strand 2	A	180	188	anti-parallel
Strand 3	A	229	237	parallel
Strand 4	A	280	287	anti-parallel
Strand 5	A	254	259	anti-parallel
Strand 6	A	262	270	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	A	314	322	parallel
Strand 3	A	293	297	anti-parallel
Strand 4	A	244	248	anti-parallel
Strand 5	A	273	275	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	410	first strand
Strand 2	A	347	355	anti-parallel
Strand 3	A	430	435	parallel
Strand 4	A	479	484	anti-parallel
Strand 5	A	452	456	anti-parallel
Strand 6	A	469	470	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	423	first strand
Strand 2	A	511	515	parallel
Strand 3	A	496	500	anti-parallel
Strand 4	A	443	447	anti-parallel
Strand 5	A	472	475	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	77	81	parallel
Strand 3	B	158	163	parallel
Strand 4	B	136	141	anti-parallel
Strand 5	B	101	103	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	69	first strand
Strand 2	B	47	59	anti-parallel
Strand 3	B	85	92	parallel
Strand 4	B	124	130	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	216	first strand
Strand 2	B	180	188	anti-parallel
Strand 3	B	229	237	parallel
Strand 4	B	280	287	anti-parallel
Strand 5	B	254	259	anti-parallel
Strand 6	B	262	270	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	314	322	parallel
Strand 3	B	293	297	anti-parallel
Strand 4	B	244	248	anti-parallel
Strand 5	B	273	275	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	410	first strand
Strand 2	B	347	355	anti-parallel
Strand 3	B	430	435	parallel
Strand 4	B	479	484	anti-parallel
Strand 5	B	453	456	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	423	first strand
Strand 2	B	511	515	parallel
Strand 3	B	496	500	anti-parallel
Strand 4	B	443	447	anti-parallel
Strand 5	B	472	475	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	77	81	parallel
Strand 3	C	158	163	parallel
Strand 4	C	136	141	anti-parallel
Strand 5	C	101	103	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	69	first strand
Strand 2	C	47	59	anti-parallel
Strand 3	C	86	92	parallel
Strand 4	C	124	129	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	213	216	anti-parallel
Strand 3	C	180	188	anti-parallel
Strand 4	C	223	237	parallel
Strand 5	C	280	287	anti-parallel
Strand 6	C	254	259	anti-parallel
Strand 7	C	262	270	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	213	216	anti-parallel
Strand 3	C	180	188	anti-parallel
Strand 4	C	223	237	parallel
Strand 5	C	314	325	parallel
Strand 6	C	293	297	anti-parallel
Strand 7	C	244	248	anti-parallel
Strand 8	C	273	275	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	410	first strand
Strand 2	C	347	355	anti-parallel
Strand 3	C	430	435	parallel
Strand 4	C	479	484	anti-parallel
Strand 5	C	453	456	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	423	first strand
Strand 2	C	511	515	parallel
Strand 3	C	496	500	anti-parallel
Strand 4	C	443	447	anti-parallel
Strand 5	C	472	475	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B7M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B7M