Analysis of interatomic Contacts of Structural Units in PDB entry:
5B7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B7P entry

There are 2 chains in PDB entry 5B7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 27PHE 275
B
 SER 28PHE 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5B7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 40Right-handed 310
Helix 2
AA2
A
41 48Right-handed alpha
Helix 3
AA3
A
79 95Right-handed alpha
Helix 4
AA4
A
135 139Right-handed 310
Helix 5
AA5
A
141 145Right-handed 310
Helix 6
AA6
A
149 153Right-handed 310
Helix 7
AA7
A
169 179Right-handed alpha
Helix 8
AA8
A
180 183Right-handed 310
Helix 9
AA9
A
202 214Right-handed alpha
Helix 10
AB1
A
221 232Right-handed alpha
Helix 11
AB2
A
254 275Right-handed alpha
Helix 12
AB3
B
37 40Right-handed 310
Helix 13
AB4
B
41 48Right-handed alpha
Helix 14
AB5
B
79 95Right-handed alpha
Helix 15
AB6
B
135 139Right-handed 310
Helix 16
AB7
B
141 145Right-handed 310
Helix 17
AB8
B
149 153Right-handed 310
Helix 18
AB9
B
169 179Right-handed alpha
Helix 19
AC1
B
180 183Right-handed 310
Helix 20
AC2
B
202 214Right-handed alpha
Helix 21
AC3
B
221 232Right-handed alpha
Helix 22
AC4
B
254 275Right-handed alpha
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There are 8 sheets in PDB entry 5B7P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 56first strand
Strand 2
A
59 66anti-parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
31 35parallel
Strand 5
A
98 107parallel
Strand 6
A
215 218anti-parallel
Strand 7
A
188 195parallel
Strand 8
A
117 125parallel
Strand 9
A
166 167anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 56first strand
Strand 2
A
59 66anti-parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
31 35parallel
Strand 5
A
98 107parallel
Strand 6
A
236 244parallel
Strand 7
A
117 125anti-parallel
Strand 8
A
166 167anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
129 130anti-parallel
Strand 3
B
198 199parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
159 161anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
B
129 130parallel
Strand 3
B
146 147anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 56first strand
Strand 2
B
59 66anti-parallel
Strand 3
B
69 75anti-parallel
Strand 4
B
31 35parallel
Strand 5
B
98 107parallel
Strand 6
B
215 218anti-parallel
Strand 7
B
188 195parallel
Strand 8
B
117 125parallel
Strand 9
B
166 167anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 56first strand
Strand 2
B
59 66anti-parallel
Strand 3
B
69 75anti-parallel
Strand 4
B
31 35parallel
Strand 5
B
98 107parallel
Strand 6
B
236 244parallel
Strand 7
B
117 125anti-parallel
Strand 8
B
166 167anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 156first strand
Strand 2
B
159 161anti-parallel
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