Analysis of interatomic Contacts of Structural Units in PDB entry:
5B7S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B7S entry

There are 4 chains in PDB entry 5B7S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1HIS 215
A
 GLY 217LYS 395
B
 MET -2HIS 215
B
 GLY 217LEU 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5B7S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 16Right-handed 310
Helix 2
AA2
A
29 43Right-handed alpha
Helix 3
AA3
A
52 73Right-handed alpha
Helix 4
AA4
A
76 78Right-handed 310
Helix 5
AA5
A
85 97Right-handed alpha
Helix 6
AA6
A
98 101Right-handed 310
Helix 7
AA7
A
114 117Right-handed 310
Helix 8
AA8
A
118 129Right-handed alpha
Helix 9
AA9
A
144 153Right-handed alpha
Helix 10
AB1
A
172 184Right-handed alpha
Helix 11
AB2
A
231 234Right-handed 310
Helix 12
AB3
A
261 265Right-handed 310
Helix 13
AB4
A
270 288Right-handed alpha
Helix 14
AB5
A
288 310Right-handed alpha
Helix 15
AB6
A
319 323Right-handed 310
Helix 16
AB7
A
335 346Right-handed alpha
Helix 17
AB8
A
358 363Right-handed alpha
Helix 18
AB9
A
379 395Right-handed alpha
Helix 19
AC1
B
4 9Right-handed alpha
Helix 20
AC2
B
10 16Right-handed 310
Helix 21
AC3
B
29 43Right-handed alpha
Helix 22
AC4
B
52 74Right-handed alpha
Helix 23
AC5
B
76 78Right-handed 310
Helix 24
AC6
B
85 98Right-handed alpha
Helix 25
AC7
B
99 101Right-handed 310
Helix 26
AC8
B
114 117Right-handed 310
Helix 27
AC9
B
118 129Right-handed alpha
Helix 28
AD1
B
144 152Right-handed alpha
Helix 29
AD2
B
172 183Right-handed alpha
Helix 30
AD3
B
231 234Right-handed 310
Helix 31
AD4
B
261 265Right-handed 310
Helix 32
AD5
B
270 288Right-handed alpha
Helix 33
AD6
B
288 310Right-handed alpha
Helix 34
AD7
B
319 323Right-handed 310
Helix 35
AD8
B
335 346Right-handed alpha
Helix 36
AD9
B
357 365Right-handed alpha
Helix 37
AE1
B
379 395Right-handed alpha
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There are 8 sheets in PDB entry 5B7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
348 349parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
225 229anti-parallel
Strand 3
A
209 213anti-parallel
Strand 4
A
186 190parallel
Strand 5
A
157 161parallel
Strand 6
A
106 109parallel
Strand 7
A
131 134parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
255 257anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
369 373anti-parallel
Strand 3
A
351 353anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
348 349parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 83first strand
Strand 2
B
225 229anti-parallel
Strand 3
B
209 213anti-parallel
Strand 4
B
186 190parallel
Strand 5
B
157 161parallel
Strand 6
B
106 109parallel
Strand 7
B
131 134parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 250first strand
Strand 2
B
255 257anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
369 373anti-parallel
Strand 3
B
351 353anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il