Analysis of interatomic Contacts of Structural Units in PDB entry:
5B7W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B7W entry

There are 2 chains in PDB entry 5B7W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 161
B
 MET 1ASP 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5B7W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 27Right-handed alpha
Helix 2
AA2
A
28 33Right-handed 310
Helix 3
AA3
A
53 71Right-handed alpha
Helix 4
AA4
A
74 76Right-handed 310
Helix 5
AA5
A
101 115Right-handed alpha
Helix 6
AA6
A
134 147Right-handed alpha
Helix 7
AA7
B
11 27Right-handed alpha
Helix 8
AA8
B
29 33Right-handed 310
Helix 9
AA9
B
53 70Right-handed alpha
Helix 10
AB1
B
74 76Right-handed 310
Helix 11
AB2
B
101 115Right-handed alpha
Helix 12
AB3
B
134 148Right-handed alpha
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There are 6 sheets in PDB entry 5B7W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 124first strand
Strand 2
A
127 132anti-parallel
Strand 3
A
3 7anti-parallel
Strand 4
A
155 160anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
90 96anti-parallel
Strand 4
A
78 80anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
90 96anti-parallel
Strand 4
A
84 85anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 124first strand
Strand 2
B
127 132anti-parallel
Strand 3
B
3 7anti-parallel
Strand 4
B
155 160anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
90 96anti-parallel
Strand 4
B
78 80anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
90 96anti-parallel
Strand 4
B
84 85anti-parallel
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