Analysis of interatomic Contacts of Structural Units in PDB entry:
5B87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B87 entry

There are 4 chains in PDB entry 5B87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2HIS 355
A
 ALA 357LYS 398
B
 MET -2HIS 355
B
 ALA 357LYS 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5B87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
10 16Right-handed 310
Helix 3
AA3
A
29 43Right-handed alpha
Helix 4
AA4
A
52 73Right-handed alpha
Helix 5
AA5
A
76 78Right-handed 310
Helix 6
AA6
A
85 98Right-handed alpha
Helix 7
AA7
A
99 101Right-handed 310
Helix 8
AA8
A
114 117Right-handed 310
Helix 9
AA9
A
118 129Right-handed alpha
Helix 10
AB1
A
144 153Right-handed alpha
Helix 11
AB2
A
172 183Right-handed alpha
Helix 12
AB3
A
201 206Right-handed alpha
Helix 13
AB4
A
231 234Right-handed 310
Helix 14
AB5
A
261 265Right-handed 310
Helix 15
AB6
A
270 288Right-handed alpha
Helix 16
AB7
A
288 310Right-handed alpha
Helix 17
AB8
A
319 323Right-handed 310
Helix 18
AB9
A
335 346Right-handed alpha
Helix 19
AC1
A
357 365Right-handed alpha
Helix 20
AC2
A
379 397Right-handed alpha
Helix 21
AC3
B
4 9Right-handed alpha
Helix 22
AC4
B
10 16Right-handed 310
Helix 23
AC5
B
29 43Right-handed alpha
Helix 24
AC6
B
52 74Right-handed alpha
Helix 25
AC7
B
76 78Right-handed 310
Helix 26
AC8
B
85 98Right-handed alpha
Helix 27
AC9
B
99 101Right-handed 310
Helix 28
AD1
B
114 117Right-handed 310
Helix 29
AD2
B
118 129Right-handed alpha
Helix 30
AD3
B
144 153Right-handed alpha
Helix 31
AD4
B
172 184Right-handed alpha
Helix 32
AD5
B
231 234Right-handed 310
Helix 33
AD6
B
261 265Right-handed 310
Helix 34
AD7
B
270 288Right-handed alpha
Helix 35
AD8
B
288 310Right-handed alpha
Helix 36
AD9
B
319 323Right-handed 310
Helix 37
AE1
B
335 346Right-handed alpha
Helix 38
AE2
B
357 365Right-handed alpha
Helix 39
AE3
B
379 394Right-handed alpha
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There are 8 sheets in PDB entry 5B87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
348 349parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
225 229anti-parallel
Strand 3
A
209 213anti-parallel
Strand 4
A
186 190parallel
Strand 5
A
157 161parallel
Strand 6
A
106 109parallel
Strand 7
A
131 134parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 251first strand
Strand 2
A
254 257anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
369 373anti-parallel
Strand 3
A
351 353anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
348 349parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 83first strand
Strand 2
B
225 229anti-parallel
Strand 3
B
209 213anti-parallel
Strand 4
B
186 190parallel
Strand 5
B
157 161parallel
Strand 6
B
106 109parallel
Strand 7
B
131 134parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 250first strand
Strand 2
B
255 257anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
369 373anti-parallel
Strand 3
B
351 353anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il