Analysis of interatomic Contacts of Structural Units in PDB entry:
5B8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B8H entry

There are 2 chains in PDB entry 5B8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASP 257
B
 PRO 4ASP 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5B8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 38Right-handed 310
Helix 2
AA2
A
60 75Right-handed alpha
Helix 3
AA3
A
98 102Right-handed 310
Helix 4
AA4
A
103 117Right-handed alpha
Helix 5
AA5
A
150 162Right-handed alpha
Helix 6
AA6
A
169 178Right-handed alpha
Helix 7
AA7
A
179 182Right-handed 310
Helix 8
AA8
A
188 217Right-handed alpha
Helix 9
AA9
A
228 236Right-handed alpha
Helix 10
AB1
A
245 257Right-handed alpha
Helix 11
AB2
B
35 38Right-handed 310
Helix 12
AB3
B
60 75Right-handed alpha
Helix 13
AB4
B
98 102Right-handed 310
Helix 14
AB5
B
103 117Right-handed alpha
Helix 15
AB6
B
150 161Right-handed alpha
Helix 16
AB7
B
169 179Right-handed alpha
Helix 17
AB8
B
188 217Right-handed alpha
Helix 18
AB9
B
228 234Right-handed alpha
Helix 19
AC1
B
245 257Right-handed alpha
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There are 4 sheets in PDB entry 5B8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 33first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
5 10anti-parallel
Strand 4
A
52 57parallel
Strand 5
A
80 82parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
92 94anti-parallel
Strand 3
A
141 149parallel
Strand 4
A
130 136anti-parallel
Strand 5
A
121 127anti-parallel
Strand 6
A
220 226parallel
Strand 7
A
241 242parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 33first strand
Strand 2
B
14 20anti-parallel
Strand 3
B
5 10anti-parallel
Strand 4
B
52 57parallel
Strand 5
B
80 82parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
92 94anti-parallel
Strand 3
B
141 149parallel
Strand 4
B
130 136anti-parallel
Strand 5
B
121 127anti-parallel
Strand 6
B
220 225parallel
Strand 7
B
241 242parallel
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