Analysis of interatomic Contacts of Structural Units in PDB entry:
5B8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B8I entry

There are 3 chains in PDB entry 5B8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 30ASN 388
B
 MET 1PHE 171
C
 GLY 11ALA 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5B8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 51Right-handed alpha
Helix 2
AA2
A
60 70Right-handed alpha
Helix 3
AA3
A
75 93Right-handed alpha
Helix 4
AA4
A
112 124Right-handed alpha
Helix 5
AA5
A
143 158Right-handed alpha
Helix 6
AA6
A
171 178Right-handed alpha
Helix 7
AA7
A
179 188Right-handed alpha
Helix 8
AA8
A
189 203Right-handed alpha
Helix 9
AA9
A
227 232Right-handed alpha
Helix 10
AB1
A
243 251Right-handed alpha
Helix 11
AB2
A
279 291Right-handed alpha
Helix 12
AB3
A
328 332Right-handed 310
Helix 13
AB4
A
361 365Right-handed 310
Helix 14
AB5
A
366 388Right-handed alpha
Helix 15
AB6
B
5 12Right-handed alpha
Helix 16
AB7
B
16 31Right-handed alpha
Helix 17
AB8
B
40 45Right-handed alpha
Helix 18
AB9
B
46 51Right-handed alpha
Helix 19
AC1
B
54 63Right-handed alpha
Helix 20
AC2
B
71 81Right-handed alpha
Helix 21
AC3
B
87 100Right-handed alpha
Helix 22
AC4
B
108 121Right-handed alpha
Helix 23
AC5
B
122 124Right-handed 310
Helix 24
AC6
B
125 141Right-handed alpha
Helix 25
AC7
B
150 157Right-handed alpha
Helix 26
AC8
B
161 166Right-handed alpha
Helix 27
AC9
C
59 61Right-handed 310
Helix 28
AD1
C
74 81Right-handed alpha
Helix 29
AD2
C
82 84Right-handed 310
Helix 30
AD3
C
96 99Right-handed 310
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There are 7 sheets in PDB entry 5B8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
206 209parallel
Strand 3
A
213 216anti-parallel
Strand 4
A
294 297parallel
Strand 5
A
320 323parallel
Strand 6
A
306 308anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
131 133parallel
Strand 3
A
103 106parallel
Strand 4
A
337 343anti-parallel
Strand 5
A
346 352anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
276 278parallel
Strand 3
A
266 268anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
69 70anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
148 149anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 18first strand
Strand 2
C
89 94anti-parallel
Strand 3
C
115 124anti-parallel
Strand 4
C
31 41anti-parallel
Strand 5
C
64 67anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 57first strand
Strand 2
C
31 41anti-parallel
Strand 3
C
115 124anti-parallel
Strand 4
C
127 128anti-parallel
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