Analysis of interatomic Contacts of Structural Units in PDB entry:
5BCA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BCA entry

There are 4 chains in PDB entry 5BCA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1TRP 516
B
 ALA 1TRP 516
C
 ALA 1TRP 516
D
 ALA 1TRP 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 85 helices in PDB entry 5BCA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 4Right-handed 310
Helix 2
2
A
22 25Right-handed alpha
Helix 3
3
A
28 40Right-handed alpha
Helix 4
4
A
52 55Right-handed alpha
Helix 5
5
A
66 77Right-handed alpha
Helix 6
6
A
105 110Right-handed 310
Helix 7
7
A
135 159Right-handed alpha
Helix 8
8
A
169 171Right-handed 310
Helix 9
9
A
197 211Right-handed alpha
Helix 10
10
A
214 221Right-handed alpha
Helix 11
11
A
228 230Right-handed 310
Helix 12
12
A
237 242Right-handed alpha
Helix 13
13
A
244 246Right-handed 310
Helix 14
14
A
248 280Right-handed alpha
Helix 15
15
A
305 308Right-handed alpha
Helix 16
16
A
313 323Right-handed alpha
Helix 17
17
A
346 360Right-handed alpha
Helix 18
18
A
375 387Right-handed alpha
Helix 19
19
A
398 402Right-handed alpha
Helix 20
20
A
405 414Right-handed alpha
Helix 21
21
A
444 446Right-handed 310
Helix 22
22
B
2 4Right-handed 310
Helix 23
23
B
22 25Right-handed alpha
Helix 24
24
B
28 41Right-handed alpha
Helix 25
25
B
52 55Right-handed alpha
Helix 26
26
B
66 78Right-handed alpha
Helix 27
27
B
105 110Right-handed 310
Helix 28
28
B
135 159Right-handed alpha
Helix 29
29
B
169 171Right-handed 310
Helix 30
30
B
197 211Right-handed alpha
Helix 31
31
B
214 220Right-handed alpha
Helix 32
32
B
228 230Right-handed 310
Helix 33
33
B
237 242Right-handed alpha
Helix 34
34
B
244 246Right-handed 310
Helix 35
35
B
248 280Right-handed alpha
Helix 36
36
B
305 308Right-handed alpha
Helix 37
37
B
313 322Right-handed alpha
Helix 38
38
B
346 360Right-handed alpha
Helix 39
39
B
375 387Right-handed alpha
Helix 40
40
B
398 402Right-handed alpha
Helix 41
41
B
405 415Right-handed alpha
Helix 42
42
B
444 446Right-handed 310
Helix 43
43
C
2 4Right-handed 310
Helix 44
44
C
22 25Right-handed alpha
Helix 45
45
C
28 40Right-handed alpha
Helix 46
46
C
52 55Right-handed alpha
Helix 47
47
C
66 77Right-handed alpha
Helix 48
48
C
105 110Right-handed 310
Helix 49
49
C
135 152Right-handed alpha
Helix 50
50
C
154 159Right-handed 310
Helix 51
51
C
169 171Right-handed 310
Helix 52
52
C
197 211Right-handed alpha
Helix 53
53
C
214 221Right-handed alpha
Helix 54
54
C
228 230Right-handed 310
Helix 55
55
C
237 242Right-handed alpha
Helix 56
56
C
244 246Right-handed 310
Helix 57
57
C
248 280Right-handed alpha
Helix 58
58
C
305 308Right-handed alpha
Helix 59
59
C
313 323Right-handed alpha
Helix 60
60
C
346 360Right-handed alpha
Helix 61
61
C
375 387Right-handed alpha
Helix 62
62
C
398 402Right-handed alpha
Helix 63
63
C
405 414Right-handed alpha
Helix 64
64
C
444 446Right-handed 310
Helix 65
65
D
2 4Right-handed 310
Helix 66
66
D
22 25Right-handed alpha
Helix 67
67
D
28 41Right-handed alpha
Helix 68
68
D
52 55Right-handed alpha
Helix 69
69
D
66 78Right-handed alpha
Helix 70
70
D
105 110Right-handed 310
Helix 71
71
D
135 159Right-handed alpha
Helix 72
72
D
169 171Right-handed 310
Helix 73
73
D
197 211Right-handed alpha
Helix 74
74
D
214 220Right-handed alpha
Helix 75
75
D
228 230Right-handed 310
Helix 76
76
D
237 242Right-handed alpha
Helix 77
77
D
244 246Right-handed 310
Helix 78
78
D
248 276Right-handed alpha
Helix 79
79
D
305 308Right-handed alpha
Helix 80
80
D
313 323Right-handed alpha
Helix 81
81
D
346 360Right-handed alpha
Helix 82
82
D
375 387Right-handed alpha
Helix 83
83
D
398 402Right-handed alpha
Helix 84
84
D
405 414Right-handed alpha
Helix 85
85
D
444 446Right-handed 310
Back to top of page

There are 16 sheets in PDB entry 5BCA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
392 395parallel
Strand 3
A
364 367parallel
Strand 4
A
326 329parallel
Strand 5
A
283 287parallel
Strand 6
A
160 165parallel
Strand 7
A
81 87parallel
Strand 8
A
43 51parallel
Strand 9
A
13 16parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
419 427parallel
Strand 3
A
466 474anti-parallel
Strand 4
A
459 461anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 441first strand
Strand 2
A
479 486anti-parallel
Strand 3
A
500 502anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
492 495anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 165first strand
Strand 2
B
81 87parallel
Strand 3
B
45 51parallel
Strand 4
B
12 16parallel
Strand 5
B
392 395parallel
Strand 6
B
364 367parallel
Strand 7
B
326 330parallel
Strand 8
B
285 287parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
511 515first strand
Strand 2
B
419 427parallel
Strand 3
B
466 474anti-parallel
Strand 4
B
459 461anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
436 441first strand
Strand 2
B
479 486anti-parallel
Strand 3
B
500 502anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 486first strand
Strand 2
B
492 495anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
392 395parallel
Strand 3
C
364 367parallel
Strand 4
C
326 329parallel
Strand 5
C
283 287parallel
Strand 6
C
160 165parallel
Strand 7
C
81 87parallel
Strand 8
C
43 51parallel
Strand 9
C
13 16parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
511 515first strand
Strand 2
C
419 427parallel
Strand 3
C
466 474anti-parallel
Strand 4
C
459 461anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
436 441first strand
Strand 2
C
479 486anti-parallel
Strand 3
C
500 502anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
484 486first strand
Strand 2
C
492 495anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 15first strand
Strand 2
D
392 395parallel
Strand 3
D
364 367parallel
Strand 4
D
326 329parallel
Strand 5
D
283 288parallel
Strand 6
D
160 165parallel
Strand 7
D
81 87parallel
Strand 8
D
43 51parallel
Strand 9
D
13 16parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
511 515first strand
Strand 2
D
419 427parallel
Strand 3
D
466 474anti-parallel
Strand 4
D
459 461anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
436 441first strand
Strand 2
D
479 486anti-parallel
Strand 3
D
500 502anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
484 486first strand
Strand 2
D
492 495anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il