Analysis of interatomic Contacts of Structural Units in PDB entry:
5BJS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BJS entry

There are 2 chains in PDB entry 5BJS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	ARG 556
B	GLU 196	ARG 2681

There are 38 helices in PDB entry 5BJS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	10	Right-handed 310
Helix 2	AA2	A	169	173	Right-handed 310
Helix 3	AA3	A	281	285	Right-handed 310
Helix 4	AA4	A	357	377	Right-handed alpha
Helix 5	AA5	A	491	503	Right-handed alpha
Helix 6	AA6	B	198	211	Right-handed alpha
Helix 7	AA7	B	211	231	Right-handed alpha
Helix 8	AA8	B	360	378	Right-handed alpha
Helix 9	AA9	B	380	389	Right-handed alpha
Helix 10	AB1	B	394	405	Right-handed alpha
Helix 11	AB2	B	415	424	Right-handed alpha
Helix 12	AB3	B	430	449	Right-handed alpha
Helix 13	AB4	B	458	465	Right-handed alpha
Helix 14	AB5	B	469	474	Right-handed 310
Helix 15	AB6	B	492	500	Right-handed alpha
Helix 16	AB7	B	500	507	Right-handed alpha
Helix 17	AB8	B	531	536	Right-handed 310
Helix 18	AB9	B	537	551	Right-handed alpha
Helix 19	AC1	B	591	606	Right-handed alpha
Helix 20	AC2	B	612	621	Right-handed alpha
Helix 21	AC3	B	626	636	Right-handed alpha
Helix 22	AC4	B	666	671	Right-handed alpha
Helix 23	AC5	B	675	679	Right-handed 310
Helix 24	AC6	B	697	702	Right-handed alpha
Helix 25	AC7	B	746	751	Right-handed alpha
Helix 26	AC8	B	764	769	Right-handed alpha
Helix 27	AC9	B	770	774	Right-handed 310
Helix 28	AD1	B	776	781	Right-handed alpha
Helix 29	AD2	B	787	792	Right-handed alpha
Helix 30	AD3	B	832	843	Right-handed alpha
Helix 31	AD4	B	874	879	Right-handed 310
Helix 32	AD5	B	924	932	Right-handed alpha
Helix 33	AD6	B	2582	2595	Right-handed alpha
Helix 34	AD7	B	2600	2616	Right-handed alpha
Helix 35	AD8	B	2624	2636	Right-handed alpha
Helix 36	AD9	B	2636	2642	Right-handed alpha
Helix 37	AE1	B	2643	2660	Right-handed alpha
Helix 38	AE2	B	2664	2683	Right-handed alpha

There are 17 sheets in PDB entry 5BJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	530	first strand
Strand 2	A	536	541	anti-parallel
Strand 3	A	545	550	anti-parallel
Strand 4	A	13	20	anti-parallel
Strand 5	B	264	273	anti-parallel
Strand 6	B	278	279	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	530	first strand
Strand 2	A	536	541	anti-parallel
Strand 3	A	545	550	anti-parallel
Strand 4	A	13	20	anti-parallel
Strand 5	B	264	273	anti-parallel
Strand 6	B	284	289	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	45	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	64	70	anti-parallel
Strand 4	A	81	89	anti-parallel
Strand 5	B	291	293	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	102	first strand
Strand 2	A	109	115	anti-parallel
Strand 3	A	120	124	anti-parallel
Strand 4	A	129	134	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	147	first strand
Strand 2	A	150	158	anti-parallel
Strand 3	A	163	167	anti-parallel
Strand 4	A	177	181	anti-parallel
Strand 5	A	228	230	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	195	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	211	215	anti-parallel
Strand 4	A	235	237	anti-parallel
Strand 5	A	295	297	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	251	first strand
Strand 2	A	254	259	anti-parallel
Strand 3	A	264	270	anti-parallel
Strand 4	A	312	319	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	342	346	anti-parallel
Strand 3	A	351	356	anti-parallel
Strand 4	A	515	518	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	385	first strand
Strand 2	A	404	408	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	872	873	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	829	831	parallel
Strand 3	B	865	868	anti-parallel
Strand 4	B	856	860	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	521	first strand
Strand 2	B	527	528	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	657	first strand
Strand 2	B	662	663	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	735	first strand
Strand 2	B	783	784	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	809	813	first strand
Strand 2	B	797	801	anti-parallel
Strand 3	B	2560	2561	anti-parallel
Strand 4	B	2568	2569	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	822	825	first strand
Strand 2	B	897	904	anti-parallel
Strand 3	B	887	894	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	880	881	first strand
Strand 2	B	915	916	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BJS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BJS