Analysis of interatomic Contacts of Structural Units in PDB entry:
5BJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BJY entry

There are 2 chains in PDB entry 5BJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 248ASN 586
B
 SER 248ASN 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5BJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
248 254Right-handed alpha
Helix 2
AA2
A
261 270Right-handed alpha
Helix 3
AA3
A
281 294Right-handed alpha
Helix 4
AA4
A
305 316Right-handed alpha
Helix 5
AA5
A
317 321Right-handed 310
Helix 6
AA6
A
332 344Right-handed alpha
Helix 7
AA7
A
356 363Right-handed alpha
Helix 8
AA8
A
363 385Right-handed alpha
Helix 9
AA9
A
397 399Right-handed 310
Helix 10
AB1
A
403 420Right-handed alpha
Helix 11
AB2
A
440 451Right-handed alpha
Helix 12
AB3
A
468 483Right-handed alpha
Helix 13
AB4
A
499 510Right-handed alpha
Helix 14
AB5
A
555 569Right-handed alpha
Helix 15
AB6
A
571 580Right-handed alpha
Helix 16
AB7
B
249 254Right-handed alpha
Helix 17
AB8
B
261 270Right-handed alpha
Helix 18
AB9
B
281 294Right-handed alpha
Helix 19
AC1
B
305 316Right-handed alpha
Helix 20
AC2
B
317 321Right-handed 310
Helix 21
AC3
B
332 344Right-handed alpha
Helix 22
AC4
B
356 363Right-handed alpha
Helix 23
AC5
B
363 385Right-handed alpha
Helix 24
AC6
B
397 399Right-handed 310
Helix 25
AC7
B
403 420Right-handed alpha
Helix 26
AC8
B
440 451Right-handed alpha
Helix 27
AC9
B
468 483Right-handed alpha
Helix 28
AD1
B
499 510Right-handed alpha
Helix 29
AD2
B
555 569Right-handed alpha
Helix 30
AD3
B
571 580Right-handed alpha
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There are 8 sheets in PDB entry 5BJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 327first strand
Strand 2
A
298 303parallel
Strand 3
A
273 277parallel
Strand 4
A
347 350parallel
Strand 5
A
389 395parallel
Strand 6
A
425 431parallel
Strand 7
A
487 491parallel
Strand 8
A
546 549anti-parallel
Strand 9
A
539 540anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
466 467parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 457first strand
Strand 2
A
517 519parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
497 498anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 327first strand
Strand 2
B
298 303parallel
Strand 3
B
273 277parallel
Strand 4
B
347 350parallel
Strand 5
B
389 395parallel
Strand 6
B
425 431parallel
Strand 7
B
487 491parallel
Strand 8
B
546 549anti-parallel
Strand 9
B
539 540anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
433 434first strand
Strand 2
B
466 467parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 457first strand
Strand 2
B
517 519parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
463 464first strand
Strand 2
B
497 498anti-parallel
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