Analysis of interatomic Contacts of Structural Units in PDB entry:
5BKA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BKA entry

There are 6 chains in PDB entry 5BKA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2PRO 145
B
 GLY 9VAL 143
C
 GLY 9VAL 143
D
 LEU 6PHE 144
E
 PRO 7PRO 145
F
 THR 8VAL 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5BKA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 27Right-handed alpha
Helix 2
AA2
A
29 35Right-handed alpha
Helix 3
AA3
A
53 63Right-handed alpha
Helix 4
AA4
B
10 27Right-handed alpha
Helix 5
AA5
B
29 36Right-handed alpha
Helix 6
AA6
B
54 68Right-handed alpha
Helix 7
AA7
C
10 27Right-handed alpha
Helix 8
AA8
C
29 35Right-handed alpha
Helix 9
AA9
C
54 65Right-handed alpha
Helix 10
AB1
D
7 27Right-handed alpha
Helix 11
AB2
D
29 35Right-handed alpha
Helix 12
AB3
D
54 66Right-handed alpha
Helix 13
AB4
D
67 69Right-handed 310
Helix 14
AB5
E
8 27Right-handed alpha
Helix 15
AB6
E
29 35Right-handed alpha
Helix 16
AB7
E
54 66Right-handed alpha
Helix 17
AB8
E
67 69Right-handed 310
Helix 18
AB9
F
9 27Right-handed alpha
Helix 19
AC1
F
29 35Right-handed alpha
Helix 20
AC2
F
54 66Right-handed alpha
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There are 7 sheets in PDB entry 5BKA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
133 140parallel
Strand 3
A
42 42parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
133 140parallel
Strand 3
A
112 123anti-parallel
Strand 4
A
93 105anti-parallel
Strand 5
A
74 86anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
132 140parallel
Strand 4
B
112 124anti-parallel
Strand 5
B
93 105anti-parallel
Strand 6
B
74 87anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 53first strand
Strand 2
C
37 44anti-parallel
Strand 3
C
131 140parallel
Strand 4
C
112 125anti-parallel
Strand 5
C
94 105anti-parallel
Strand 6
C
74 86anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 53first strand
Strand 2
D
37 44anti-parallel
Strand 3
D
131 140parallel
Strand 4
D
112 125anti-parallel
Strand 5
D
93 105anti-parallel
Strand 6
D
74 86anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
52 53first strand
Strand 2
E
37 44anti-parallel
Strand 3
E
131 140parallel
Strand 4
E
112 125anti-parallel
Strand 5
E
93 105anti-parallel
Strand 6
E
74 87anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
52 53first strand
Strand 2
F
37 44anti-parallel
Strand 3
F
131 140parallel
Strand 4
F
112 125anti-parallel
Strand 5
F
93 105anti-parallel
Strand 6
F
74 87anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il