Analysis of interatomic Contacts of Structural Units in PDB entry:
5BKE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BKE entry

There are 7 chains in PDB entry 5BKE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 291
B	ILE 3	GLN 291
C	MET 1	VAL 289
D	ALA 4	VAL 289
E	MET 1	VAL 289
F	THR 2	GLN 290
G	ILE 3	GLN 290

There are 74 helices in PDB entry 5BKE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	41	Right-handed alpha
Helix 2	AA2	A	51	60	Right-handed alpha
Helix 3	AA3	A	61	63	Right-handed 310
Helix 4	AA4	A	102	109	Right-handed alpha
Helix 5	AA5	A	110	113	Right-handed 310
Helix 6	AA6	A	147	153	Right-handed alpha
Helix 7	AA7	A	155	163	Right-handed alpha
Helix 8	AA8	A	170	178	Right-handed alpha
Helix 9	AA9	A	184	191	Right-handed alpha
Helix 10	AB1	A	223	239	Right-handed alpha
Helix 11	AB2	A	240	242	Right-handed 310
Helix 12	AB3	B	26	41	Right-handed alpha
Helix 13	AB4	B	51	60	Right-handed alpha
Helix 14	AB5	B	61	63	Right-handed 310
Helix 15	AB6	B	102	109	Right-handed alpha
Helix 16	AB7	B	110	113	Right-handed 310
Helix 17	AB8	B	147	153	Right-handed alpha
Helix 18	AB9	B	155	163	Right-handed alpha
Helix 19	AC1	B	170	178	Right-handed alpha
Helix 20	AC2	B	184	191	Right-handed alpha
Helix 21	AC3	B	223	239	Right-handed alpha
Helix 22	AC4	B	240	242	Right-handed 310
Helix 23	AC5	C	26	41	Right-handed alpha
Helix 24	AC6	C	51	60	Right-handed alpha
Helix 25	AC7	C	61	63	Right-handed 310
Helix 26	AC8	C	102	109	Right-handed alpha
Helix 27	AC9	C	110	113	Right-handed 310
Helix 28	AD1	C	147	153	Right-handed alpha
Helix 29	AD2	C	155	163	Right-handed alpha
Helix 30	AD3	C	170	177	Right-handed alpha
Helix 31	AD4	C	186	191	Right-handed alpha
Helix 32	AD5	C	223	239	Right-handed alpha
Helix 33	AD6	C	240	242	Right-handed 310
Helix 34	AD7	D	26	41	Right-handed alpha
Helix 35	AD8	D	51	60	Right-handed alpha
Helix 36	AD9	D	61	63	Right-handed 310
Helix 37	AE1	D	102	109	Right-handed alpha
Helix 38	AE2	D	110	113	Right-handed 310
Helix 39	AE3	D	147	154	Right-handed alpha
Helix 40	AE4	D	155	163	Right-handed alpha
Helix 41	AE5	D	170	178	Right-handed alpha
Helix 42	AE6	D	186	191	Right-handed alpha
Helix 43	AE7	D	223	239	Right-handed alpha
Helix 44	AE8	D	240	242	Right-handed 310
Helix 45	AE9	E	26	41	Right-handed alpha
Helix 46	AF1	E	51	60	Right-handed alpha
Helix 47	AF2	E	61	63	Right-handed 310
Helix 48	AF3	E	109	113	Right-handed 310
Helix 49	AF4	E	147	153	Right-handed alpha
Helix 50	AF5	E	155	163	Right-handed alpha
Helix 51	AF6	E	170	178	Right-handed alpha
Helix 52	AF7	E	184	191	Right-handed alpha
Helix 53	AF8	E	223	239	Right-handed alpha
Helix 54	AF9	E	240	242	Right-handed 310
Helix 55	AG1	F	26	41	Right-handed alpha
Helix 56	AG2	F	51	60	Right-handed alpha
Helix 57	AG3	F	61	63	Right-handed 310
Helix 58	AG4	F	105	111	Right-handed alpha
Helix 59	AG5	F	147	153	Right-handed alpha
Helix 60	AG6	F	155	163	Right-handed alpha
Helix 61	AG7	F	170	178	Right-handed alpha
Helix 62	AG8	F	184	191	Right-handed alpha
Helix 63	AG9	F	223	239	Right-handed alpha
Helix 64	AH1	F	240	242	Right-handed 310
Helix 65	AH2	G	26	41	Right-handed alpha
Helix 66	AH3	G	51	60	Right-handed alpha
Helix 67	AH4	G	61	63	Right-handed 310
Helix 68	AH5	G	105	111	Right-handed alpha
Helix 69	AH6	G	147	153	Right-handed alpha
Helix 70	AH7	G	155	163	Right-handed alpha
Helix 71	AH8	G	170	178	Right-handed alpha
Helix 72	AH9	G	184	191	Right-handed alpha
Helix 73	AI1	G	223	239	Right-handed alpha
Helix 74	AI2	G	240	242	Right-handed 310

There are 28 sheets in PDB entry 5BKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	14	17	anti-parallel
Strand 3	A	42	45	parallel
Strand 4	A	254	258	anti-parallel
Strand 5	A	127	134	anti-parallel
Strand 6	A	276	281	anti-parallel
Strand 7	A	86	87	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	142	146	anti-parallel
Strand 3	A	262	266	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	166	169	anti-parallel
Strand 3	A	216	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	14	17	anti-parallel
Strand 3	B	42	45	parallel
Strand 4	B	254	258	anti-parallel
Strand 5	B	127	134	anti-parallel
Strand 6	B	276	281	anti-parallel
Strand 7	B	86	87	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	142	146	anti-parallel
Strand 3	B	262	266	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	197	first strand
Strand 2	B	166	169	anti-parallel
Strand 3	B	216	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	14	17	anti-parallel
Strand 3	C	42	45	parallel
Strand 4	C	254	258	anti-parallel
Strand 5	C	127	134	anti-parallel
Strand 6	C	276	281	anti-parallel
Strand 7	C	86	87	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	142	146	anti-parallel
Strand 3	C	262	266	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	197	first strand
Strand 2	C	166	169	anti-parallel
Strand 3	C	216	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	201	first strand
Strand 2	C	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	14	16	anti-parallel
Strand 3	D	42	45	parallel
Strand 4	D	254	258	anti-parallel
Strand 5	D	127	134	anti-parallel
Strand 6	D	276	281	anti-parallel
Strand 7	D	86	87	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	142	146	anti-parallel
Strand 3	D	262	266	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	197	first strand
Strand 2	D	166	169	anti-parallel
Strand 3	D	216	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	14	17	anti-parallel
Strand 3	E	42	45	parallel
Strand 4	E	254	258	anti-parallel
Strand 5	E	127	134	anti-parallel
Strand 6	E	276	281	anti-parallel
Strand 7	E	86	87	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	247	first strand
Strand 2	E	142	146	anti-parallel
Strand 3	E	262	266	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	197	first strand
Strand 2	E	166	169	anti-parallel
Strand 3	E	216	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	201	first strand
Strand 2	E	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	14	17	anti-parallel
Strand 3	F	42	45	parallel
Strand 4	F	254	258	anti-parallel
Strand 5	F	127	134	anti-parallel
Strand 6	F	276	281	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	247	first strand
Strand 2	F	142	146	anti-parallel
Strand 3	F	262	266	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	194	197	first strand
Strand 2	F	166	169	anti-parallel
Strand 3	F	216	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	201	first strand
Strand 2	F	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	14	17	anti-parallel
Strand 3	G	42	45	parallel
Strand 4	G	254	258	anti-parallel
Strand 5	G	127	134	anti-parallel
Strand 6	G	276	281	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	244	247	first strand
Strand 2	G	142	146	anti-parallel
Strand 3	G	262	266	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	197	first strand
Strand 2	G	166	169	anti-parallel
Strand 3	G	216	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	201	first strand
Strand 2	G	208	210	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BKE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BKE