Analysis of interatomic Contacts of Structural Units in PDB entry:
5BKF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BKF entry

There are 5 chains in PDB entry 5BKF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 15	ARG 418
B	LEU 15	ARG 418
C	LEU 15	ARG 418
D	LEU 15	ARG 418
E	VAL 29	LEU 475

There are 36 helices in PDB entry 5BKF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	25	Right-handed alpha
Helix 2	AA2	A	78	81	Right-handed 310
Helix 3	AA3	A	93	100	Right-handed 310
Helix 4	AA4	A	227	248	Right-handed alpha
Helix 5	AA5	A	255	281	Right-handed alpha
Helix 6	AA6	A	288	316	Right-handed alpha
Helix 7	AA7	A	384	416	Right-handed alpha
Helix 8	AA8	B	16	25	Right-handed alpha
Helix 9	AA9	B	78	81	Right-handed 310
Helix 10	AB1	B	93	100	Right-handed 310
Helix 11	AB2	B	227	248	Right-handed alpha
Helix 12	AB3	B	255	280	Right-handed alpha
Helix 13	AB4	B	288	316	Right-handed alpha
Helix 14	AB5	B	384	416	Right-handed alpha
Helix 15	AB6	C	16	25	Right-handed alpha
Helix 16	AB7	C	93	100	Right-handed 310
Helix 17	AB8	C	227	248	Right-handed alpha
Helix 18	AB9	C	255	280	Right-handed alpha
Helix 19	AC1	C	288	315	Right-handed alpha
Helix 20	AC2	C	384	414	Right-handed alpha
Helix 21	AC3	D	16	25	Right-handed alpha
Helix 22	AC4	D	26	30	Right-handed 310
Helix 23	AC5	D	78	81	Right-handed 310
Helix 24	AC6	D	93	100	Right-handed 310
Helix 25	AC7	D	227	235	Right-handed alpha
Helix 26	AC8	D	235	248	Right-handed alpha
Helix 27	AC9	D	255	280	Right-handed alpha
Helix 28	AD1	D	288	316	Right-handed alpha
Helix 29	AD2	D	384	416	Right-handed alpha
Helix 30	AD3	E	30	39	Right-handed alpha
Helix 31	AD4	E	109	113	Right-handed 310
Helix 32	AD5	E	244	251	Right-handed alpha
Helix 33	AD6	E	251	268	Right-handed alpha
Helix 34	AD7	E	276	298	Right-handed alpha
Helix 35	AD8	E	305	333	Right-handed alpha
Helix 36	AD9	E	445	474	Right-handed alpha

There are 21 sheets in PDB entry 5BKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	125	127	anti-parallel
Strand 3	A	132	138	anti-parallel
Strand 4	A	70	76	anti-parallel
Strand 5	A	44	51	anti-parallel
Strand 6	A	173	177	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	125	127	anti-parallel
Strand 3	A	132	138	anti-parallel
Strand 4	A	70	76	anti-parallel
Strand 5	A	44	51	anti-parallel
Strand 6	A	183	184	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	64	66	anti-parallel
Strand 3	A	140	144	anti-parallel
Strand 4	A	110	114	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	156	164	anti-parallel
Strand 3	A	216	225	anti-parallel
Strand 4	A	194	195	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	156	164	anti-parallel
Strand 3	A	216	225	anti-parallel
Strand 4	A	200	203	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	123	127	anti-parallel
Strand 3	B	132	144	anti-parallel
Strand 4	B	64	76	anti-parallel
Strand 5	B	45	59	anti-parallel
Strand 6	B	174	177	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	114	first strand
Strand 2	B	132	144	anti-parallel
Strand 3	B	64	76	anti-parallel
Strand 4	B	45	59	anti-parallel
Strand 5	B	183	184	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	156	164	anti-parallel
Strand 3	B	216	225	anti-parallel
Strand 4	B	194	196	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	156	164	anti-parallel
Strand 3	B	216	225	anti-parallel
Strand 4	B	201	204	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	177	first strand
Strand 2	C	45	59	parallel
Strand 3	C	64	76	anti-parallel
Strand 4	C	140	144	anti-parallel
Strand 5	C	110	114	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	59	first strand
Strand 2	C	183	184	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	126	127	anti-parallel
Strand 3	C	132	134	anti-parallel
Strand 4	C	64	76	anti-parallel
Strand 5	C	137	138	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	C	156	164	anti-parallel
Strand 3	C	216	225	anti-parallel
Strand 4	C	194	196	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	C	156	164	anti-parallel
Strand 3	C	216	225	anti-parallel
Strand 4	C	201	203	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	123	127	anti-parallel
Strand 3	D	132	144	anti-parallel
Strand 4	D	64	76	anti-parallel
Strand 5	D	44	59	anti-parallel
Strand 6	D	173	177	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	114	first strand
Strand 2	D	132	144	anti-parallel
Strand 3	D	64	76	anti-parallel
Strand 4	D	44	59	anti-parallel
Strand 5	D	183	184	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	156	164	anti-parallel
Strand 3	D	216	225	anti-parallel
Strand 4	D	194	203	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	70	first strand
Strand 2	E	78	88	anti-parallel
Strand 3	E	149	160	anti-parallel
Strand 4	E	126	130	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	107	first strand
Strand 2	E	142	144	anti-parallel
Strand 3	E	149	160	anti-parallel
Strand 4	E	78	88	anti-parallel
Strand 5	E	60	63	anti-parallel
Strand 6	E	191	193	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	123	first strand
Strand 2	E	172	180	anti-parallel
Strand 3	E	233	241	anti-parallel
Strand 4	E	218	220	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	224	225	first strand
Strand 2	E	229	230	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BKF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BKF