Analysis of interatomic Contacts of Structural Units in PDB entry:
5BKG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BKG entry

There are 5 chains in PDB entry 5BKG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 15	ARG 418
B	LEU 15	ARG 418
C	LEU 15	ARG 418
D	LEU 15	ARG 418
E	VAL 29	LEU 475

There are 41 helices in PDB entry 5BKG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	26	Right-handed alpha
Helix 2	AA2	A	78	81	Right-handed 310
Helix 3	AA3	A	93	100	Right-handed 310
Helix 4	AA4	A	227	234	Right-handed alpha
Helix 5	AA5	A	234	248	Right-handed alpha
Helix 6	AA6	A	255	281	Right-handed alpha
Helix 7	AA7	A	288	315	Right-handed alpha
Helix 8	AA8	A	384	415	Right-handed alpha
Helix 9	AA9	B	16	25	Right-handed alpha
Helix 10	AB1	B	93	100	Right-handed 310
Helix 11	AB2	B	227	234	Right-handed alpha
Helix 12	AB3	B	234	250	Right-handed alpha
Helix 13	AB4	B	255	280	Right-handed alpha
Helix 14	AB5	B	288	316	Right-handed alpha
Helix 15	AB6	B	384	416	Right-handed alpha
Helix 16	AB7	C	16	25	Right-handed alpha
Helix 17	AB8	C	93	100	Right-handed 310
Helix 18	AB9	C	148	152	Right-handed 310
Helix 19	AC1	C	227	234	Right-handed alpha
Helix 20	AC2	C	234	247	Right-handed alpha
Helix 21	AC3	C	248	250	Right-handed 310
Helix 22	AC4	C	255	280	Right-handed alpha
Helix 23	AC5	C	288	316	Right-handed alpha
Helix 24	AC6	C	384	415	Right-handed alpha
Helix 25	AC7	D	16	24	Right-handed alpha
Helix 26	AC8	D	78	81	Right-handed 310
Helix 27	AC9	D	93	98	Right-handed alpha
Helix 28	AD1	D	227	234	Right-handed alpha
Helix 29	AD2	D	234	246	Right-handed alpha
Helix 30	AD3	D	246	251	Right-handed alpha
Helix 31	AD4	D	255	280	Right-handed alpha
Helix 32	AD5	D	288	315	Right-handed alpha
Helix 33	AD6	D	384	415	Right-handed alpha
Helix 34	AD7	E	31	39	Right-handed alpha
Helix 35	AD8	E	109	113	Right-handed 310
Helix 36	AD9	E	244	251	Right-handed alpha
Helix 37	AE1	E	251	265	Right-handed alpha
Helix 38	AE2	E	266	268	Right-handed 310
Helix 39	AE3	E	275	297	Right-handed alpha
Helix 40	AE4	E	305	332	Right-handed alpha
Helix 41	AE5	E	448	475	Right-handed alpha

There are 21 sheets in PDB entry 5BKG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	123	127	anti-parallel
Strand 3	A	132	143	anti-parallel
Strand 4	A	64	76	anti-parallel
Strand 5	A	44	59	anti-parallel
Strand 6	A	173	176	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	114	first strand
Strand 2	A	132	143	anti-parallel
Strand 3	A	64	76	anti-parallel
Strand 4	A	44	59	anti-parallel
Strand 5	A	183	185	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	156	164	anti-parallel
Strand 3	A	216	225	anti-parallel
Strand 4	A	194	196	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	156	164	anti-parallel
Strand 3	A	216	225	anti-parallel
Strand 4	A	201	204	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	114	first strand
Strand 2	B	132	144	anti-parallel
Strand 3	B	64	76	anti-parallel
Strand 4	B	44	59	anti-parallel
Strand 5	B	173	177	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	126	first strand
Strand 2	B	132	144	anti-parallel
Strand 3	B	64	76	anti-parallel
Strand 4	B	44	59	anti-parallel
Strand 5	B	183	184	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	163	164	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	161	first strand
Strand 2	B	218	225	anti-parallel
Strand 3	B	194	196	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	161	first strand
Strand 2	B	218	225	anti-parallel
Strand 3	B	201	203	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	123	128	anti-parallel
Strand 3	C	132	144	anti-parallel
Strand 4	C	64	76	anti-parallel
Strand 5	C	44	56	anti-parallel
Strand 6	C	173	176	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	114	first strand
Strand 2	C	132	144	anti-parallel
Strand 3	C	64	76	anti-parallel
Strand 4	C	44	56	anti-parallel
Strand 5	C	183	185	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	107	first strand
Strand 2	C	156	165	anti-parallel
Strand 3	C	216	225	anti-parallel
Strand 4	C	194	196	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	107	first strand
Strand 2	C	156	165	anti-parallel
Strand 3	C	216	225	anti-parallel
Strand 4	C	201	203	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	123	128	anti-parallel
Strand 3	D	132	144	anti-parallel
Strand 4	D	64	76	anti-parallel
Strand 5	D	44	59	anti-parallel
Strand 6	D	173	177	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	114	first strand
Strand 2	D	132	144	anti-parallel
Strand 3	D	64	76	anti-parallel
Strand 4	D	44	59	anti-parallel
Strand 5	D	183	185	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	157	first strand
Strand 2	D	223	225	anti-parallel
Strand 3	D	194	196	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	163	first strand
Strand 2	D	217	220	anti-parallel
Strand 3	D	201	203	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	128	first strand
Strand 2	E	149	160	anti-parallel
Strand 3	E	78	89	anti-parallel
Strand 4	E	58	70	anti-parallel
Strand 5	E	189	193	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	143	first strand
Strand 2	E	149	160	anti-parallel
Strand 3	E	78	89	anti-parallel
Strand 4	E	58	70	anti-parallel
Strand 5	E	199	200	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	123	first strand
Strand 2	E	172	181	anti-parallel
Strand 3	E	233	241	anti-parallel
Strand 4	E	218	220	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	224	225	first strand
Strand 2	E	229	230	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BKG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BKG