Analysis of interatomic Contacts of Structural Units in PDB entry:
5BKK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BKK entry

There are 8 chains in PDB entry 5BKK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 20	ALA 336
B	SER 115	ALA 336
C	ALA 20	ALA 336
D	SER 115	ALA 336
E	ALA 20	ALA 336
F	SER 115	ALA 336
G	ALA 20	ALA 336
H	SER 115	ALA 336

There are 97 helices in PDB entry 5BKK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	42	Right-handed alpha
Helix 2	AA2	A	45	58	Right-handed alpha
Helix 3	AA3	A	69	107	Right-handed alpha
Helix 4	AA4	A	124	129	Right-handed alpha
Helix 5	AA5	A	145	155	Right-handed alpha
Helix 6	AA6	A	166	176	Right-handed 310
Helix 7	AA7	A	187	202	Right-handed alpha
Helix 8	AA8	A	216	224	Right-handed alpha
Helix 9	AA9	A	230	239	Right-handed alpha
Helix 10	AB1	A	247	256	Right-handed alpha
Helix 11	AB2	A	279	284	Right-handed alpha
Helix 12	AB3	A	284	289	Right-handed alpha
Helix 13	AB4	A	323	332	Right-handed alpha
Helix 14	AB5	B	124	129	Right-handed alpha
Helix 15	AB6	B	147	155	Right-handed alpha
Helix 16	AB7	B	166	171	Right-handed alpha
Helix 17	AB8	B	187	199	Right-handed alpha
Helix 18	AB9	B	216	224	Right-handed alpha
Helix 19	AC1	B	230	238	Right-handed alpha
Helix 20	AC2	B	248	256	Right-handed alpha
Helix 21	AC3	B	323	335	Right-handed alpha
Helix 22	AC4	C	21	42	Right-handed alpha
Helix 23	AC5	C	45	58	Right-handed alpha
Helix 24	AC6	C	69	107	Right-handed alpha
Helix 25	AC7	C	124	129	Right-handed alpha
Helix 26	AC8	C	130	132	Right-handed 310
Helix 27	AC9	C	145	154	Right-handed alpha
Helix 28	AD1	C	166	171	Right-handed alpha
Helix 29	AD2	C	188	202	Right-handed alpha
Helix 30	AD3	C	213	215	Right-handed 310
Helix 31	AD4	C	216	224	Right-handed alpha
Helix 32	AD5	C	230	240	Right-handed alpha
Helix 33	AD6	C	247	256	Right-handed alpha
Helix 34	AD7	C	279	284	Right-handed alpha
Helix 35	AD8	C	284	289	Right-handed alpha
Helix 36	AD9	C	323	328	Right-handed alpha
Helix 37	AE1	C	329	334	Right-handed alpha
Helix 38	AE2	D	124	129	Right-handed alpha
Helix 39	AE3	D	130	133	Right-handed 310
Helix 40	AE4	D	147	155	Right-handed alpha
Helix 41	AE5	D	166	171	Right-handed alpha
Helix 42	AE6	D	188	200	Right-handed alpha
Helix 43	AE7	D	216	224	Right-handed alpha
Helix 44	AE8	D	230	241	Right-handed alpha
Helix 45	AE9	D	247	256	Right-handed alpha
Helix 46	AF1	D	279	284	Right-handed alpha
Helix 47	AF2	D	284	290	Right-handed alpha
Helix 48	AF3	D	323	335	Right-handed alpha
Helix 49	AF4	E	21	43	Right-handed alpha
Helix 50	AF5	E	45	58	Right-handed alpha
Helix 51	AF6	E	69	107	Right-handed alpha
Helix 52	AF7	E	124	128	Right-handed 310
Helix 53	AF8	E	130	134	Right-handed 310
Helix 54	AF9	E	146	155	Right-handed alpha
Helix 55	AG1	E	166	171	Right-handed alpha
Helix 56	AG2	E	174	178	Right-handed 310
Helix 57	AG3	E	187	202	Right-handed alpha
Helix 58	AG4	E	216	224	Right-handed alpha
Helix 59	AG5	E	230	240	Right-handed alpha
Helix 60	AG6	E	247	256	Right-handed alpha
Helix 61	AG7	E	279	284	Right-handed alpha
Helix 62	AG8	E	284	290	Right-handed alpha
Helix 63	AG9	E	323	329	Right-handed alpha
Helix 64	AH1	E	329	334	Right-handed alpha
Helix 65	AH2	F	124	129	Right-handed alpha
Helix 66	AH3	F	130	134	Right-handed 310
Helix 67	AH4	F	147	155	Right-handed alpha
Helix 68	AH5	F	166	171	Right-handed alpha
Helix 69	AH6	F	187	202	Right-handed alpha
Helix 70	AH7	F	216	224	Right-handed alpha
Helix 71	AH8	F	230	241	Right-handed alpha
Helix 72	AH9	F	247	256	Right-handed alpha
Helix 73	AI1	F	323	335	Right-handed alpha
Helix 74	AI2	G	21	42	Right-handed alpha
Helix 75	AI3	G	45	58	Right-handed alpha
Helix 76	AI4	G	69	105	Right-handed alpha
Helix 77	AI5	G	124	129	Right-handed alpha
Helix 78	AI6	G	145	155	Right-handed alpha
Helix 79	AI7	G	170	174	Right-handed 310
Helix 80	AI8	G	187	200	Right-handed alpha
Helix 81	AI9	G	213	215	Right-handed 310
Helix 82	AJ1	G	216	224	Right-handed alpha
Helix 83	AJ2	G	230	238	Right-handed alpha
Helix 84	AJ3	G	247	256	Right-handed alpha
Helix 85	AJ4	G	279	284	Right-handed alpha
Helix 86	AJ5	G	284	289	Right-handed alpha
Helix 87	AJ6	G	323	334	Right-handed alpha
Helix 88	AJ7	H	124	131	Right-handed alpha
Helix 89	AJ8	H	147	156	Right-handed alpha
Helix 90	AJ9	H	166	171	Right-handed alpha
Helix 91	AK1	H	188	202	Right-handed alpha
Helix 92	AK2	H	213	215	Right-handed 310
Helix 93	AK3	H	216	224	Right-handed alpha
Helix 94	AK4	H	230	241	Right-handed alpha
Helix 95	AK5	H	247	256	Right-handed alpha
Helix 96	AK6	H	279	283	Right-handed 310
Helix 97	AK7	H	323	332	Right-handed alpha

There are 16 sheets in PDB entry 5BKK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	139	143	parallel
Strand 3	A	117	121	parallel
Strand 4	A	178	183	parallel
Strand 5	A	206	210	parallel
Strand 6	A	227	229	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	268	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	292	296	anti-parallel
Strand 4	A	303	304	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	139	143	parallel
Strand 3	B	118	121	parallel
Strand 4	B	180	183	parallel
Strand 5	B	206	210	parallel
Strand 6	B	227	229	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	268	first strand
Strand 2	B	317	322	anti-parallel
Strand 3	B	292	297	anti-parallel
Strand 4	B	302	304	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	139	143	parallel
Strand 3	C	118	121	parallel
Strand 4	C	180	183	parallel
Strand 5	C	206	210	parallel
Strand 6	C	227	229	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	267	first strand
Strand 2	C	317	322	anti-parallel
Strand 3	C	292	297	anti-parallel
Strand 4	C	303	304	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	139	143	parallel
Strand 3	D	118	121	parallel
Strand 4	D	180	183	parallel
Strand 5	D	206	209	parallel
Strand 6	D	227	228	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	268	first strand
Strand 2	D	317	322	anti-parallel
Strand 3	D	292	297	anti-parallel
Strand 4	D	302	304	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	139	143	parallel
Strand 3	E	118	121	parallel
Strand 4	E	180	183	parallel
Strand 5	E	206	210	parallel
Strand 6	E	227	229	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	265	268	first strand
Strand 2	E	317	321	anti-parallel
Strand 3	E	292	297	anti-parallel
Strand 4	E	302	304	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	139	143	parallel
Strand 3	F	118	121	parallel
Strand 4	F	180	183	parallel
Strand 5	F	206	210	parallel
Strand 6	F	227	229	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	263	268	first strand
Strand 2	F	317	322	anti-parallel
Strand 3	F	292	297	anti-parallel
Strand 4	F	302	304	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	161	first strand
Strand 2	G	139	143	parallel
Strand 3	G	118	121	parallel
Strand 4	G	180	183	parallel
Strand 5	G	206	210	parallel
Strand 6	G	227	229	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	263	268	first strand
Strand 2	G	317	322	anti-parallel
Strand 3	G	292	296	anti-parallel
Strand 4	G	303	304	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	139	143	parallel
Strand 3	H	118	121	parallel
Strand 4	H	180	183	parallel
Strand 5	H	207	209	parallel
Strand 6	H	227	228	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	263	268	first strand
Strand 2	H	317	322	anti-parallel
Strand 3	H	292	297	anti-parallel
Strand 4	H	302	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BKK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BKK