Analysis of interatomic Contacts of Structural Units in PDB entry:
5BMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BMF entry

There are 2 chains in PDB entry 5BMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 101	PRO 1099
L	ASP 501	ARG 2103

There are 9 helices in PDB entry 5BMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	297	299	Right-handed 310
Helix 2	AA2	H	321	325	Right-handed 310
Helix 3	AA3	H	1013	1019	Right-handed alpha
Helix 4	AA4	H	1042	1044	Right-handed 310
Helix 5	AA5	H	1073	1075	Right-handed 310
Helix 6	AA6	H	1087	1090	Right-handed 310
Helix 7	AA7	L	725	729	Right-handed 310
Helix 8	AA8	L	2013	2019	Right-handed alpha
Helix 9	AA9	L	2075	2080	Right-handed alpha

There are 11 sheets in PDB entry 5BMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	103	107	first strand
Strand 2	H	118	125	anti-parallel
Strand 3	H	312	317	anti-parallel
Strand 4	H	302	307	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	112	first strand
Strand 2	H	405	409	parallel
Strand 3	H	326	351	anti-parallel
Strand 4	H	197	204	anti-parallel
Strand 5	H	210	252	anti-parallel
Strand 6	H	291	293	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	112	first strand
Strand 2	H	405	409	parallel
Strand 3	H	326	351	anti-parallel
Strand 4	H	397	401	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1006	1010	first strand
Strand 2	H	1021	1031	anti-parallel
Strand 3	H	1062	1071	anti-parallel
Strand 4	H	1049	1051	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1006	1010	first strand
Strand 2	H	1021	1031	anti-parallel
Strand 3	H	1062	1071	anti-parallel
Strand 4	H	1055	1056	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1037	1040	first strand
Strand 2	H	1080	1086	anti-parallel
Strand 3	H	1091	1097	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	504	507	first strand
Strand 2	L	519	552	anti-parallel
Strand 3	L	716	721	anti-parallel
Strand 4	L	706	711	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	510	514	first strand
Strand 2	L	805	810	parallel
Strand 3	L	730	752	anti-parallel
Strand 4	L	598	604	anti-parallel
Strand 5	L	611	615	anti-parallel
Strand 6	L	696	697	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	510	514	first strand
Strand 2	L	805	810	parallel
Strand 3	L	730	752	anti-parallel
Strand 4	L	799	801	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2006	2010	first strand
Strand 2	L	2021	2031	anti-parallel
Strand 3	L	2065	2074	anti-parallel
Strand 4	L	2051	2055	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2045	2046	first strand
Strand 2	L	2037	2042	anti-parallel
Strand 3	L	2084	2089	anti-parallel
Strand 4	L	2097	2101	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BMF