Analysis of interatomic Contacts of Structural Units in PDB entry:
5BMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BMP entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 5BMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 22ALA 118
A
 HIS 120GLY 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5BMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 55Right-handed alpha
Helix 2
AA2
A
71 86Right-handed alpha
Helix 3
AA3
A
97 108Right-handed alpha
Helix 4
AA4
A
132 136Right-handed 310
Helix 5
AA5
A
143 154Right-handed alpha
Helix 6
AA6
A
171 180Right-handed alpha
Helix 7
AA7
A
181 182Right-handed 310
Helix 8
AA8
A
183 187Right-handed 310
Helix 9
AA9
A
200 209Right-handed alpha
Helix 10
AB1
A
210 212Right-handed 310
Helix 11
AB2
A
236 251Right-handed alpha
Helix 12
AB3
A
276 292Right-handed alpha
Helix 13
AB4
A
304 314Right-handed alpha
Helix 14
AB5
A
324 336Right-handed alpha
Helix 15
AB6
A
359 373Right-handed alpha
Helix 16
AB7
A
375 387Right-handed alpha
Helix 17
AB8
A
399 412Right-handed alpha
Helix 18
AB9
A
413 415Right-handed 310
Helix 19
AC1
A
453 470Right-handed alpha
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There are 4 sheets in PDB entry 5BMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
125 131anti-parallel
Strand 3
A
112 116anti-parallel
Strand 4
A
62 66parallel
Strand 5
A
90 95parallel
Strand 6
A
165 167parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 219first strand
Strand 2
A
191 195parallel
Strand 3
A
254 258parallel
Strand 4
A
265 268anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 320first strand
Strand 2
A
296 299parallel
Strand 3
A
339 342parallel
Strand 4
A
346 349anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
444 450anti-parallel
Strand 3
A
431 437anti-parallel
Strand 4
A
424 427anti-parallel
Strand 5
A
417 419anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il