Analysis of interatomic Contacts of Structural Units in PDB entry:
5BMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BMT entry

There are 2 chains in PDB entry 5BMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 28ALA 259
B
 GLN 31GLU 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5BMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 63Right-handed alpha
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
A
88 93Right-handed alpha
Helix 4
AA4
A
207 221Right-handed alpha
Helix 5
AA5
B
58 63Right-handed alpha
Helix 6
AA6
B
83 87Right-handed 310
Helix 7
AA7
B
88 93Right-handed alpha
Helix 8
AA8
B
207 221Right-handed alpha
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There are 10 sheets in PDB entry 5BMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 40first strand
Strand 2
A
46 50anti-parallel
Strand 3
A
56 57anti-parallel
Strand 4
A
95 101parallel
Strand 5
A
72 79anti-parallel
Strand 6
A
32 40anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
203 206parallel
Strand 3
A
140 153anti-parallel
Strand 4
A
128 135anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
203 206parallel
Strand 3
A
140 153anti-parallel
Strand 4
A
192 200anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
156 162parallel
Strand 3
A
175 189anti-parallel
Strand 4
A
170 172anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
175 189anti-parallel
Strand 3
A
225 236parallel
Strand 4
A
252 255anti-parallel
Strand 5
A
225 236anti-parallel
Strand 6
A
243 248anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 40first strand
Strand 2
B
46 50anti-parallel
Strand 3
B
56 57anti-parallel
Strand 4
B
95 101parallel
Strand 5
B
72 79anti-parallel
Strand 6
B
32 40anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
203 206parallel
Strand 3
B
140 153anti-parallel
Strand 4
B
128 135anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
203 206parallel
Strand 3
B
140 153anti-parallel
Strand 4
B
192 200anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
156 162parallel
Strand 3
B
175 189anti-parallel
Strand 4
B
170 172anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
175 189anti-parallel
Strand 3
B
225 236parallel
Strand 4
B
252 255anti-parallel
Strand 5
B
225 236anti-parallel
Strand 6
B
243 248anti-parallel
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