Analysis of interatomic Contacts of Structural Units in PDB entry:
5BMU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BMU entry

There are 8 chains in PDB entry 5BMU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ASN 167
B	THR 3	ASP 168
C	HIS 0	ASN 167
D	THR 3	ASP 168
E	HIS 0	ASN 167
F	THR 3	ASP 168
G	HIS 0	ASN 167
H	LEU 4	ASP 168

There are 69 helices in PDB entry 5BMU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	15	Right-handed alpha
Helix 2	AA2	A	43	55	Right-handed alpha
Helix 3	AA3	A	57	62	Right-handed 310
Helix 4	AA4	A	64	81	Right-handed alpha
Helix 5	AA5	A	91	103	Right-handed alpha
Helix 6	AA6	A	114	130	Right-handed alpha
Helix 7	AA7	A	132	139	Right-handed alpha
Helix 8	AA8	A	139	151	Right-handed alpha
Helix 9	AA9	B	16	24	Right-handed alpha
Helix 10	AB1	B	50	62	Right-handed alpha
Helix 11	AB2	B	71	89	Right-handed alpha
Helix 12	AB3	B	94	106	Right-handed alpha
Helix 13	AB4	B	118	131	Right-handed alpha
Helix 14	AB5	B	131	140	Right-handed alpha
Helix 15	AB6	B	144	157	Right-handed alpha
Helix 16	AB7	B	157	167	Right-handed alpha
Helix 17	AB8	C	2	14	Right-handed alpha
Helix 18	AB9	C	43	55	Right-handed alpha
Helix 19	AC1	C	57	62	Right-handed 310
Helix 20	AC2	C	64	81	Right-handed alpha
Helix 21	AC3	C	91	102	Right-handed alpha
Helix 22	AC4	C	103	105	Right-handed 310
Helix 23	AC5	C	114	131	Right-handed alpha
Helix 24	AC6	C	134	139	Right-handed alpha
Helix 25	AC7	C	139	151	Right-handed alpha
Helix 26	AC8	D	16	23	Right-handed alpha
Helix 27	AC9	D	50	62	Right-handed alpha
Helix 28	AD1	D	71	87	Right-handed alpha
Helix 29	AD2	D	94	107	Right-handed alpha
Helix 30	AD3	D	118	131	Right-handed alpha
Helix 31	AD4	D	131	138	Right-handed alpha
Helix 32	AD5	D	144	156	Right-handed alpha
Helix 33	AD6	D	157	168	Right-handed alpha
Helix 34	AD7	E	2	15	Right-handed alpha
Helix 35	AD8	E	43	55	Right-handed alpha
Helix 36	AD9	E	57	61	Right-handed 310
Helix 37	AE1	E	64	81	Right-handed alpha
Helix 38	AE2	E	91	102	Right-handed alpha
Helix 39	AE3	E	114	130	Right-handed alpha
Helix 40	AE4	E	132	139	Right-handed alpha
Helix 41	AE5	E	139	151	Right-handed alpha
Helix 42	AE6	F	14	23	Right-handed alpha
Helix 43	AE7	F	24	28	Right-handed 310
Helix 44	AE8	F	50	62	Right-handed alpha
Helix 45	AE9	F	71	88	Right-handed alpha
Helix 46	AF1	F	89	91	Right-handed 310
Helix 47	AF2	F	94	106	Right-handed alpha
Helix 48	AF3	F	118	130	Right-handed alpha
Helix 49	AF4	F	131	141	Right-handed alpha
Helix 50	AF5	F	144	156	Right-handed alpha
Helix 51	AF6	F	157	167	Right-handed alpha
Helix 52	AF7	G	2	14	Right-handed alpha
Helix 53	AF8	G	43	55	Right-handed alpha
Helix 54	AF9	G	57	61	Right-handed 310
Helix 55	AG1	G	64	81	Right-handed alpha
Helix 56	AG2	G	85	90	Right-handed alpha
Helix 57	AG3	G	90	102	Right-handed alpha
Helix 58	AG4	G	114	131	Right-handed alpha
Helix 59	AG5	G	132	139	Right-handed alpha
Helix 60	AG6	G	139	151	Right-handed alpha
Helix 61	AG7	H	16	23	Right-handed alpha
Helix 62	AG8	H	50	62	Right-handed alpha
Helix 63	AG9	H	71	88	Right-handed alpha
Helix 64	AH1	H	94	106	Right-handed alpha
Helix 65	AH2	H	107	109	Right-handed 310
Helix 66	AH3	H	118	130	Right-handed alpha
Helix 67	AH4	H	131	141	Right-handed alpha
Helix 68	AH5	H	144	157	Right-handed alpha
Helix 69	AH6	H	157	167	Right-handed alpha

There are 8 sheets in PDB entry 5BMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	30	33	anti-parallel
Strand 3	A	41	42	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	4	8	parallel
Strand 3	B	39	41	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	C	30	33	anti-parallel
Strand 3	C	41	42	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	35	first strand
Strand 2	D	4	9	parallel
Strand 3	D	39	41	anti-parallel
Strand 4	D	47	48	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	25	first strand
Strand 2	E	30	32	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	34	first strand
Strand 2	F	4	8	parallel
Strand 3	F	39	40	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	25	first strand
Strand 2	G	30	33	anti-parallel
Strand 3	G	41	42	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	39	42	anti-parallel
Strand 3	H	46	48	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BMU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BMU