Analysis of interatomic Contacts of Structural Units in PDB entry:
5BMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BMX entry

There are 4 chains in PDB entry 5BMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2MET 248
B
 ARG 3MET 248
C
 ARG 3MET 248
D
 ARG 3MET 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 5BMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
44 46Right-handed 310
Helix 3
AA3
A
47 55Right-handed alpha
Helix 4
AA4
A
79 86Right-handed alpha
Helix 5
AA5
A
95 102Right-handed alpha
Helix 6
AA6
A
105 119Right-handed alpha
Helix 7
AA7
A
130 136Right-handed alpha
Helix 8
AA8
A
138 149Right-handed alpha
Helix 9
AA9
A
150 154Right-handed 310
Helix 10
AB1
A
166 170Right-handed 310
Helix 11
AB2
A
177 197Right-handed alpha
Helix 12
AB3
A
197 204Right-handed alpha
Helix 13
AB4
A
216 222Right-handed alpha
Helix 14
AB5
A
232 238Right-handed 310
Helix 15
AB6
A
239 246Right-handed alpha
Helix 16
AB7
B
16 29Right-handed alpha
Helix 17
AB8
B
44 46Right-handed 310
Helix 18
AB9
B
47 55Right-handed alpha
Helix 19
AC1
B
79 86Right-handed alpha
Helix 20
AC2
B
95 102Right-handed alpha
Helix 21
AC3
B
105 119Right-handed alpha
Helix 22
AC4
B
130 136Right-handed alpha
Helix 23
AC5
B
138 149Right-handed alpha
Helix 24
AC6
B
150 154Right-handed 310
Helix 25
AC7
B
166 170Right-handed 310
Helix 26
AC8
B
177 197Right-handed alpha
Helix 27
AC9
B
197 204Right-handed alpha
Helix 28
AD1
B
216 222Right-handed alpha
Helix 29
AD2
B
232 238Right-handed 310
Helix 30
AD3
B
239 247Right-handed alpha
Helix 31
AD4
C
16 29Right-handed alpha
Helix 32
AD5
C
44 46Right-handed 310
Helix 33
AD6
C
47 55Right-handed alpha
Helix 34
AD7
C
79 86Right-handed alpha
Helix 35
AD8
C
95 102Right-handed alpha
Helix 36
AD9
C
105 119Right-handed alpha
Helix 37
AE1
C
130 136Right-handed alpha
Helix 38
AE2
C
138 149Right-handed alpha
Helix 39
AE3
C
150 154Right-handed 310
Helix 40
AE4
C
166 170Right-handed 310
Helix 41
AE5
C
177 197Right-handed alpha
Helix 42
AE6
C
197 204Right-handed alpha
Helix 43
AE7
C
216 222Right-handed alpha
Helix 44
AE8
C
232 238Right-handed 310
Helix 45
AE9
C
239 247Right-handed alpha
Helix 46
AF1
D
16 29Right-handed alpha
Helix 47
AF2
D
44 46Right-handed 310
Helix 48
AF3
D
47 55Right-handed alpha
Helix 49
AF4
D
79 86Right-handed alpha
Helix 50
AF5
D
95 102Right-handed alpha
Helix 51
AF6
D
105 119Right-handed alpha
Helix 52
AF7
D
130 136Right-handed alpha
Helix 53
AF8
D
139 149Right-handed alpha
Helix 54
AF9
D
150 154Right-handed 310
Helix 55
AG1
D
177 197Right-handed alpha
Helix 56
AG2
D
197 204Right-handed alpha
Helix 57
AG3
D
216 222Right-handed alpha
Helix 58
AG4
D
232 238Right-handed 310
Helix 59
AG5
D
239 247Right-handed alpha
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There are 4 sheets in PDB entry 5BMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
37 42parallel
Strand 3
A
60 63parallel
Strand 4
A
90 93parallel
Strand 5
A
122 127parallel
Strand 6
A
160 164parallel
Strand 7
A
205 208parallel
Strand 8
A
228 231parallel
Strand 9
A
5 10parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
38 42parallel
Strand 3
B
60 63parallel
Strand 4
B
90 93parallel
Strand 5
B
122 127parallel
Strand 6
B
160 164parallel
Strand 7
B
205 208parallel
Strand 8
B
228 231parallel
Strand 9
B
6 10parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 10first strand
Strand 2
C
38 42parallel
Strand 3
C
60 63parallel
Strand 4
C
90 93parallel
Strand 5
C
122 127parallel
Strand 6
C
160 164parallel
Strand 7
C
205 208parallel
Strand 8
C
228 231parallel
Strand 9
C
6 10parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 10first strand
Strand 2
D
37 42parallel
Strand 3
D
60 63parallel
Strand 4
D
90 93parallel
Strand 5
D
122 127parallel
Strand 6
D
160 164parallel
Strand 7
D
205 208parallel
Strand 8
D
228 231parallel
Strand 9
D
5 10parallel
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