Analysis of interatomic Contacts of Structural Units in PDB entry:
5BMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BMY entry

There is 1 chain in PDB entry 5BMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5BMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 14Right-handed alpha
Helix 2
AA2
A
38 54Right-handed alpha
Helix 3
AA3
A
64 74Right-handed alpha
Helix 4
AA4
A
88 95Right-handed alpha
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
112 119Right-handed alpha
Helix 7
AA7
A
153 163Right-handed alpha
Helix 8
AA8
A
175 186Right-handed alpha
Helix 9
AA9
A
207 223Right-handed alpha
Helix 10
AB1
A
231 241Right-handed alpha
Helix 11
AB2
A
250 252Right-handed 310
Helix 12
AB3
A
253 260Right-handed alpha
Helix 13
AB4
A
294 305Right-handed alpha
Helix 14
AB5
A
308 319Right-handed alpha
Helix 15
AB6
A
326 334Right-handed alpha
Helix 16
AB7
A
336 349Right-handed alpha
Helix 17
AB8
A
357 375Right-handed alpha
Helix 18
AB9
A
378 387Right-handed alpha
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There are 5 sheets in PDB entry 5BMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
29 32parallel
Strand 3
A
81 85parallel
Strand 4
A
280 289anti-parallel
Strand 5
A
128 133anti-parallel
Strand 6
A
323 324anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
280 289anti-parallel
Strand 3
A
350 351parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
124 125anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
244 249parallel
Strand 3
A
136 140anti-parallel
Strand 4
A
264 267anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 194first strand
Strand 2
A
197 204anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il