Analysis of interatomic Contacts of Structural Units in PDB entry:
5BN4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BN4 entry

There are 2 chains in PDB entry 5BN4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 567
B	PRO 2	PRO 414

There are 36 helices in PDB entry 5BN4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	95	Right-handed alpha
Helix 2	AA2	A	204	209	Right-handed alpha
Helix 3	AA3	A	228	240	Right-handed alpha
Helix 4	AA4	A	253	264	Right-handed alpha
Helix 5	AA5	A	265	267	Right-handed 310
Helix 6	AA6	A	275	278	Right-handed 310
Helix 7	AA7	A	291	310	Right-handed alpha
Helix 8	AA8	A	322	336	Right-handed alpha
Helix 9	AA9	A	341	345	Right-handed 310
Helix 10	AB1	A	348	358	Right-handed alpha
Helix 11	AB2	A	381	385	Right-handed 310
Helix 12	AB3	A	388	395	Right-handed alpha
Helix 13	AB4	A	405	411	Right-handed alpha
Helix 14	AB5	A	426	438	Right-handed alpha
Helix 15	AB6	A	440	464	Right-handed alpha
Helix 16	AB7	A	471	488	Right-handed alpha
Helix 17	AB8	A	502	522	Right-handed alpha
Helix 18	AB9	A	528	535	Right-handed alpha
Helix 19	AC1	A	537	543	Right-handed alpha
Helix 20	AC2	A	544	547	Right-handed 310
Helix 21	AC3	A	548	563	Right-handed alpha
Helix 22	AC4	B	66	70	Right-handed 310
Helix 23	AC5	B	115	120	Right-handed alpha
Helix 24	AC6	B	139	152	Right-handed alpha
Helix 25	AC7	B	165	179	Right-handed alpha
Helix 26	AC8	B	195	216	Right-handed alpha
Helix 27	AC9	B	227	242	Right-handed alpha
Helix 28	AD1	B	247	251	Right-handed 310
Helix 29	AD2	B	254	264	Right-handed alpha
Helix 30	AD3	B	283	286	Right-handed 310
Helix 31	AD4	B	289	297	Right-handed alpha
Helix 32	AD5	B	306	312	Right-handed alpha
Helix 33	AD6	B	327	332	Right-handed alpha
Helix 34	AD7	B	333	357	Right-handed alpha
Helix 35	AD8	B	368	383	Right-handed alpha
Helix 36	AD9	B	393	408	Right-handed alpha

There are 10 sheets in PDB entry 5BN4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	11	15	anti-parallel
Strand 3	A	42	47	anti-parallel
Strand 4	A	31	39	anti-parallel
Strand 5	A	23	26	anti-parallel
Strand 6	A	60	61	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	180	183	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	280	285	parallel
Strand 3	A	244	250	parallel
Strand 4	A	314	320	parallel
Strand 5	A	370	379	parallel
Strand 6	A	361	364	anti-parallel
Strand 7	A	192	193	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	280	285	parallel
Strand 3	A	244	250	parallel
Strand 4	A	314	320	parallel
Strand 5	A	370	379	parallel
Strand 6	A	218	222	parallel
Strand 7	A	400	401	parallel
Strand 8	A	423	424	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	145	first strand
Strand 2	A	131	137	anti-parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	160	162	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	152	157	anti-parallel
Strand 3	A	169	171	anti-parallel
Strand 4	A	174	176	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	8	12	anti-parallel
Strand 3	B	38	43	anti-parallel
Strand 4	B	28	34	anti-parallel
Strand 5	B	20	23	anti-parallel
Strand 6	B	55	60	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	91	93	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	185	190	parallel
Strand 3	B	156	162	parallel
Strand 4	B	220	226	parallel
Strand 5	B	273	281	parallel
Strand 6	B	267	268	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	185	190	parallel
Strand 3	B	156	162	parallel
Strand 4	B	220	226	parallel
Strand 5	B	273	281	parallel
Strand 6	B	131	134	parallel
Strand 7	B	301	304	parallel
Strand 8	B	324	325	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BN4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BN4