Analysis of interatomic Contacts of Structural Units in PDB entry:
5BN5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BN5 entry

There are 2 chains in PDB entry 5BN5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 566
B	PRO 2	PRO 411

There are 33 helices in PDB entry 5BN5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	95	Right-handed alpha
Helix 2	AA2	A	228	237	Right-handed alpha
Helix 3	AA3	A	253	264	Right-handed alpha
Helix 4	AA4	A	275	278	Right-handed 310
Helix 5	AA5	A	292	312	Right-handed alpha
Helix 6	AA6	A	321	336	Right-handed alpha
Helix 7	AA7	A	341	345	Right-handed 310
Helix 8	AA8	A	346	347	Right-handed 310
Helix 9	AA9	A	348	358	Right-handed alpha
Helix 10	AB1	A	381	385	Right-handed 310
Helix 11	AB2	A	388	395	Right-handed alpha
Helix 12	AB3	A	405	411	Right-handed alpha
Helix 13	AB4	A	426	438	Right-handed alpha
Helix 14	AB5	A	441	459	Right-handed alpha
Helix 15	AB6	A	471	488	Right-handed alpha
Helix 16	AB7	A	502	521	Right-handed alpha
Helix 17	AB8	A	528	535	Right-handed alpha
Helix 18	AB9	A	536	543	Right-handed alpha
Helix 19	AC1	A	549	564	Right-handed alpha
Helix 20	AC2	B	115	120	Right-handed alpha
Helix 21	AC3	B	140	152	Right-handed alpha
Helix 22	AC4	B	165	179	Right-handed alpha
Helix 23	AC5	B	195	216	Right-handed alpha
Helix 24	AC6	B	227	242	Right-handed alpha
Helix 25	AC7	B	247	251	Right-handed 310
Helix 26	AC8	B	252	253	Right-handed 310
Helix 27	AC9	B	254	264	Right-handed alpha
Helix 28	AD1	B	289	297	Right-handed alpha
Helix 29	AD2	B	306	312	Right-handed alpha
Helix 30	AD3	B	327	331	Right-handed 310
Helix 31	AD4	B	333	356	Right-handed alpha
Helix 32	AD5	B	367	383	Right-handed alpha
Helix 33	AD6	B	393	409	Right-handed alpha

There are 13 sheets in PDB entry 5BN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	11	15	anti-parallel
Strand 3	A	42	47	anti-parallel
Strand 4	A	31	39	anti-parallel
Strand 5	A	23	26	anti-parallel
Strand 6	A	60	61	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	180	183	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	280	285	parallel
Strand 3	A	244	250	parallel
Strand 4	A	314	320	parallel
Strand 5	A	372	378	parallel
Strand 6	A	218	221	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	B	98	99	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	145	first strand
Strand 2	A	131	137	anti-parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	160	162	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	152	157	anti-parallel
Strand 3	A	169	171	anti-parallel
Strand 4	A	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	423	424	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	8	12	anti-parallel
Strand 3	B	38	43	anti-parallel
Strand 4	B	29	35	anti-parallel
Strand 5	B	20	23	anti-parallel
Strand 6	B	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	91	93	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	185	190	parallel
Strand 3	B	156	162	parallel
Strand 4	B	220	226	parallel
Strand 5	B	273	281	parallel
Strand 6	B	267	268	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	185	190	parallel
Strand 3	B	156	162	parallel
Strand 4	B	220	226	parallel
Strand 5	B	273	281	parallel
Strand 6	B	131	134	parallel
Strand 7	B	301	304	parallel
Strand 8	B	324	325	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	124	125	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BN5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BN5