Analysis of interatomic Contacts of Structural Units in PDB entry:
5BNC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BNC entry

There are 2 chains in PDB entry 5BNC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 15SER 266
B
 VAL 25SER 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5BNC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 40Right-handed alpha
Helix 2
AA2
A
77 86Right-handed alpha
Helix 3
AA3
A
101 104Right-handed 310
Helix 4
AA4
A
118 133Right-handed alpha
Helix 5
AA5
A
134 139Right-handed 310
Helix 6
AA6
A
169 175Right-handed alpha
Helix 7
AA7
A
180 183Right-handed 310
Helix 8
AA8
A
184 195Right-handed alpha
Helix 9
AA9
A
195 206Right-handed alpha
Helix 10
AB1
A
248 250Right-handed 310
Helix 11
AB2
A
251 265Right-handed alpha
Helix 12
AB3
B
29 40Right-handed alpha
Helix 13
AB4
B
77 86Right-handed alpha
Helix 14
AB5
B
101 104Right-handed 310
Helix 15
AB6
B
118 133Right-handed alpha
Helix 16
AB7
B
134 139Right-handed 310
Helix 17
AB8
B
169 175Right-handed alpha
Helix 18
AB9
B
180 182Right-handed 310
Helix 19
AC1
B
183 195Right-handed alpha
Helix 20
AC2
B
195 206Right-handed alpha
Helix 21
AC3
B
250 265Right-handed alpha
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There are 6 sheets in PDB entry 5BNC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 61first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
106 115anti-parallel
Strand 5
A
145 159anti-parallel
Strand 6
A
68 74anti-parallel
Strand 7
A
63 65anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 61first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
106 115anti-parallel
Strand 5
A
145 159anti-parallel
Strand 6
A
164 168anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 220first strand
Strand 2
A
224 231anti-parallel
Strand 3
A
234 241anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 61first strand
Strand 2
B
43 49anti-parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
106 115anti-parallel
Strand 5
B
145 159anti-parallel
Strand 6
B
68 74anti-parallel
Strand 7
B
63 65anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 61first strand
Strand 2
B
43 49anti-parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
106 115anti-parallel
Strand 5
B
145 159anti-parallel
Strand 6
B
164 168anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 220first strand
Strand 2
B
224 231anti-parallel
Strand 3
B
234 241anti-parallel
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