Analysis of interatomic Contacts of Structural Units in PDB entry:
5BND

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BND entry

There are 3 chains in PDB entry 5BND (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 327	LEU 505
B	THR 327	LEU 505
C	THR 327	LEU 505

There are 21 helices in PDB entry 5BND. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	382	384	Right-handed 310
Helix 2	AA2	A	401	405	Right-handed 310
Helix 3	AA3	A	406	411	Right-handed alpha
Helix 4	AA4	A	412	418	Right-handed alpha
Helix 5	AA5	A	423	428	Right-handed alpha
Helix 6	AA6	A	454	456	Right-handed 310
Helix 7	AA7	A	467	473	Right-handed alpha
Helix 8	AA8	B	382	384	Right-handed 310
Helix 9	AA9	B	401	405	Right-handed 310
Helix 10	AB1	B	406	412	Right-handed alpha
Helix 11	AB2	B	412	418	Right-handed alpha
Helix 12	AB3	B	423	428	Right-handed alpha
Helix 13	AB4	B	454	456	Right-handed 310
Helix 14	AB5	B	467	473	Right-handed alpha
Helix 15	AB6	C	382	384	Right-handed 310
Helix 16	AB7	C	401	405	Right-handed 310
Helix 17	AB8	C	406	412	Right-handed alpha
Helix 18	AB9	C	412	418	Right-handed alpha
Helix 19	AC1	C	423	428	Right-handed alpha
Helix 20	AC2	C	454	456	Right-handed 310
Helix 21	AC3	C	467	472	Right-handed alpha

There are 9 sheets in PDB entry 5BND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	380	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	357	364	anti-parallel
Strand 4	A	329	336	anti-parallel
Strand 5	A	385	387	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	350	352	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	481	486	parallel
Strand 3	A	489	494	anti-parallel
Strand 4	A	499	503	anti-parallel
Strand 5	A	458	464	anti-parallel
Strand 6	A	449	452	anti-parallel
Strand 7	A	440	442	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	380	first strand
Strand 2	B	367	372	anti-parallel
Strand 3	B	357	364	anti-parallel
Strand 4	B	329	336	anti-parallel
Strand 5	B	385	387	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	344	first strand
Strand 2	B	350	352	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	395	first strand
Strand 2	B	481	486	parallel
Strand 3	B	489	494	anti-parallel
Strand 4	B	499	504	anti-parallel
Strand 5	B	458	464	anti-parallel
Strand 6	B	449	452	anti-parallel
Strand 7	B	440	442	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	380	first strand
Strand 2	C	367	372	anti-parallel
Strand 3	C	357	363	anti-parallel
Strand 4	C	329	336	anti-parallel
Strand 5	C	385	387	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	344	first strand
Strand 2	C	350	352	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	395	first strand
Strand 2	C	481	486	parallel
Strand 3	C	489	494	anti-parallel
Strand 4	C	499	503	anti-parallel
Strand 5	C	458	464	anti-parallel
Strand 6	C	449	452	anti-parallel
Strand 7	C	440	442	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BND

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BND