Analysis of interatomic Contacts of Structural Units in PDB entry:
5BNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BNI entry

There are 2 chains in PDB entry 5BNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 54PRO 285
B
 TRP 54ARG 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5BNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 77Right-handed alpha
Helix 2
AA2
A
79 83Right-handed 310
Helix 3
AA3
A
86 99Right-handed alpha
Helix 4
AA4
A
107 110Right-handed 310
Helix 5
AA5
A
111 118Right-handed alpha
Helix 6
AA6
A
134 139Right-handed 310
Helix 7
AA7
A
149 152Right-handed 310
Helix 8
AA8
A
153 160Right-handed alpha
Helix 9
AA9
A
187 203Right-handed alpha
Helix 10
AB1
A
224 229Right-handed alpha
Helix 11
AB2
A
230 234Right-handed 310
Helix 12
AB3
A
260 273Right-handed alpha
Helix 13
AB4
B
62 77Right-handed alpha
Helix 14
AB5
B
79 85Right-handed 310
Helix 15
AB6
B
86 99Right-handed alpha
Helix 16
AB7
B
107 110Right-handed 310
Helix 17
AB8
B
111 118Right-handed alpha
Helix 18
AB9
B
133 141Right-handed alpha
Helix 19
AC1
B
149 152Right-handed 310
Helix 20
AC2
B
153 160Right-handed alpha
Helix 21
AC3
B
187 203Right-handed alpha
Helix 22
AC4
B
224 229Right-handed alpha
Helix 23
AC5
B
229 234Right-handed alpha
Helix 24
AC6
B
260 273Right-handed alpha
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There are 2 sheets in PDB entry 5BNI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
206 213parallel
Strand 3
A
239 248parallel
Strand 4
A
276 283parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 131first strand
Strand 2
B
206 213parallel
Strand 3
B
239 248parallel
Strand 4
B
276 283parallel
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