Analysis of interatomic Contacts of Structural Units in PDB entry:
5BNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BNT entry

There are 4 chains in PDB entry 5BNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 HIS 0ARG 370
B
 HIS 0ARG 370
A
 LYS 2GLU 369
D
 HIS 0GLU 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 5BNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
11 24Right-handed alpha
Helix 2
AA2
C
25 29Right-handed 310
Helix 3
AA3
C
59 64Right-handed alpha
Helix 4
AA4
C
74 88Right-handed alpha
Helix 5
AA5
C
111 126Right-handed alpha
Helix 6
AA6
C
134 150Right-handed alpha
Helix 7
AA7
C
163 167Right-handed 310
Helix 8
AA8
C
168 185Right-handed alpha
Helix 9
AA9
C
186 192Right-handed alpha
Helix 10
AB1
C
196 210Right-handed alpha
Helix 11
AB2
C
239 253Right-handed alpha
Helix 12
AB3
C
288 298Right-handed alpha
Helix 13
AB4
C
309 317Right-handed alpha
Helix 14
AB5
C
318 323Right-handed alpha
Helix 15
AB6
C
357 369Right-handed alpha
Helix 16
AB7
B
11 24Right-handed alpha
Helix 17
AB8
B
25 29Right-handed 310
Helix 18
AB9
B
59 64Right-handed alpha
Helix 19
AC1
B
74 88Right-handed alpha
Helix 20
AC2
B
111 126Right-handed alpha
Helix 21
AC3
B
134 150Right-handed alpha
Helix 22
AC4
B
163 167Right-handed 310
Helix 23
AC5
B
168 185Right-handed alpha
Helix 24
AC6
B
186 192Right-handed alpha
Helix 25
AC7
B
196 210Right-handed alpha
Helix 26
AC8
B
239 253Right-handed alpha
Helix 27
AC9
B
288 298Right-handed alpha
Helix 28
AD1
B
309 317Right-handed alpha
Helix 29
AD2
B
318 323Right-handed alpha
Helix 30
AD3
B
356 369Right-handed alpha
Helix 31
AD4
A
11 24Right-handed alpha
Helix 32
AD5
A
25 29Right-handed 310
Helix 33
AD6
A
59 64Right-handed alpha
Helix 34
AD7
A
74 88Right-handed alpha
Helix 35
AD8
A
111 126Right-handed alpha
Helix 36
AD9
A
134 150Right-handed alpha
Helix 37
AE1
A
163 167Right-handed 310
Helix 38
AE2
A
168 185Right-handed alpha
Helix 39
AE3
A
186 192Right-handed alpha
Helix 40
AE4
A
196 210Right-handed alpha
Helix 41
AE5
A
239 253Right-handed alpha
Helix 42
AE6
A
288 299Right-handed alpha
Helix 43
AE7
A
309 317Right-handed alpha
Helix 44
AE8
A
318 323Right-handed alpha
Helix 45
AE9
A
356 369Right-handed alpha
Helix 46
AF1
D
11 24Right-handed alpha
Helix 47
AF2
D
25 29Right-handed 310
Helix 48
AF3
D
59 64Right-handed alpha
Helix 49
AF4
D
74 88Right-handed alpha
Helix 50
AF5
D
111 126Right-handed alpha
Helix 51
AF6
D
134 150Right-handed alpha
Helix 52
AF7
D
163 167Right-handed 310
Helix 53
AF8
D
168 185Right-handed alpha
Helix 54
AF9
D
186 192Right-handed alpha
Helix 55
AG1
D
196 210Right-handed alpha
Helix 56
AG2
D
239 253Right-handed alpha
Helix 57
AG3
D
288 298Right-handed alpha
Helix 58
AG4
D
309 317Right-handed alpha
Helix 59
AG5
D
318 323Right-handed alpha
Helix 60
AG6
D
357 370Right-handed alpha
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There are 8 sheets in PDB entry 5BNT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 56first strand
Strand 2
C
31 36parallel
Strand 3
C
3 7parallel
Strand 4
C
68 71parallel
Strand 5
C
93 96parallel
Strand 6
C
129 132parallel
Strand 7
C
107 110parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 268first strand
Strand 2
C
153 162parallel
Strand 3
C
274 283anti-parallel
Strand 4
C
342 350anti-parallel
Strand 5
C
328 335anti-parallel
Strand 6
C
303 305parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
31 36parallel
Strand 3
B
3 7parallel
Strand 4
B
68 71parallel
Strand 5
B
93 96parallel
Strand 6
B
129 132parallel
Strand 7
B
107 110parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 268first strand
Strand 2
B
153 162parallel
Strand 3
B
274 283anti-parallel
Strand 4
B
342 350anti-parallel
Strand 5
B
328 335anti-parallel
Strand 6
B
303 305parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
31 36parallel
Strand 3
A
3 7parallel
Strand 4
A
68 71parallel
Strand 5
A
93 96parallel
Strand 6
A
129 132parallel
Strand 7
A
107 110parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
262 269anti-parallel
Strand 3
A
153 162parallel
Strand 4
A
275 283anti-parallel
Strand 5
A
342 349anti-parallel
Strand 6
A
328 335anti-parallel
Strand 7
A
303 305parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 56first strand
Strand 2
D
31 36parallel
Strand 3
D
3 7parallel
Strand 4
D
68 71parallel
Strand 5
D
93 96parallel
Strand 6
D
129 132parallel
Strand 7
D
107 110parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
262 268first strand
Strand 2
D
153 162parallel
Strand 3
D
274 283anti-parallel
Strand 4
D
342 350anti-parallel
Strand 5
D
328 335anti-parallel
Strand 6
D
303 305parallel
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