Analysis of interatomic Contacts of Structural Units in PDB entry:
5BNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BNV entry

There are 6 chains in PDB entry 5BNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 58ARG 134
B
 ARG 19LEU 97
D
 THR 58ALA 135
E
 ILE 26GLY 94
F
 ASP 68GLY 125
C
 ASP 68ALA 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5BNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 77Right-handed alpha
Helix 2
AA2
A
85 114Right-handed alpha
Helix 3
AA3
A
120 132Right-handed alpha
Helix 4
AA4
B
20 26Right-handed alpha
Helix 5
AA5
B
30 41Right-handed alpha
Helix 6
AA6
B
49 76Right-handed alpha
Helix 7
AA7
B
82 93Right-handed alpha
Helix 8
AA8
D
63 79Right-handed alpha
Helix 9
AA9
D
85 114Right-handed alpha
Helix 10
AB1
D
120 131Right-handed alpha
Helix 11
AB2
E
30 41Right-handed alpha
Helix 12
AB3
E
49 77Right-handed alpha
Helix 13
AB4
E
82 92Right-handed alpha
Helix 14
AB5
F
76 82Right-handed 310
Helix 15
AB6
F
106 123Right-handed alpha
Helix 16
AB7
C
76 82Right-handed 310
Helix 17
AB8
C
84 88Right-handed 310
Helix 18
AB9
C
106 123Right-handed alpha
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There are 4 sheets in PDB entry 5BNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
B
80 81parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
B
45 46parallel
Strand 3
C
70 71anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
83 84first strand
Strand 2
E
80 81parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 46first strand
Strand 2
F
70 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il