Analysis of interatomic Contacts of Structural Units in PDB entry:
5BNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BNW entry

There are 2 chains in PDB entry 5BNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 314LYS 1028
D
 SER 185SER 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5BNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
314 331Right-handed alpha
Helix 2
AA2
A
332 347Right-handed alpha
Helix 3
AA3
A
350 364Right-handed alpha
Helix 4
AA4
A
366 381Right-handed alpha
Helix 5
AA5
A
384 398Right-handed alpha
Helix 6
AA6
A
400 415Right-handed alpha
Helix 7
AA7
A
418 432Right-handed alpha
Helix 8
AA8
A
434 449Right-handed alpha
Helix 9
AA9
A
452 467Right-handed alpha
Helix 10
AB1
A
471 489Right-handed alpha
Helix 11
AB2
A
496 503Right-handed 310
Helix 12
AB3
A
506 527Right-handed alpha
Helix 13
AB4
A
539 543Right-handed 310
Helix 14
AB5
A
558 565Right-handed alpha
Helix 15
AB6
A
566 571Right-handed alpha
Helix 16
AB7
A
589 599Right-handed alpha
Helix 17
AB8
A
606 608Right-handed 310
Helix 18
AB9
A
610 621Right-handed alpha
Helix 19
AC1
A
637 643Right-handed alpha
Helix 20
AC2
A
675 682Right-handed 310
Helix 21
AC3
A
697 702Right-handed alpha
Helix 22
AC4
A
703 706Right-handed 310
Helix 23
AC5
A
730 737Right-handed alpha
Helix 24
AC6
A
770 783Right-handed alpha
Helix 25
AC7
A
799 804Right-handed alpha
Helix 26
AC8
A
804 809Right-handed alpha
Helix 27
AC9
A
823 826Right-handed 310
Helix 28
AD1
A
839 843Right-handed 310
Helix 29
AD2
A
844 858Right-handed alpha
Helix 30
AD3
A
869 871Right-handed 310
Helix 31
AD4
A
872 884Right-handed alpha
Helix 32
AD5
A
886 888Right-handed 310
Helix 33
AD6
A
897 906Right-handed alpha
Helix 34
AD7
A
920 929Right-handed alpha
Helix 35
AD8
A
940 943Right-handed 310
Helix 36
AD9
A
944 954Right-handed alpha
Helix 37
AE1
A
955 959Right-handed 310
Helix 38
AE2
A
962 976Right-handed alpha
Helix 39
AE3
A
976 994Right-handed alpha
Helix 40
AE4
A
998 1019Right-handed alpha
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There are 3 sheets in PDB entry 5BNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 604first strand
Strand 2
A
576 582parallel
Strand 3
A
546 552parallel
Strand 4
A
625 628parallel
Strand 5
A
648 651parallel
Strand 6
A
666 669parallel
Strand 7
A
685 688parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 744first strand
Strand 2
A
764 767anti-parallel
Strand 3
A
709 711parallel
Strand 4
A
724 727anti-parallel
Strand 5
A
817 821anti-parallel
Strand 6
A
792 796parallel
Strand 7
A
786 789anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
890 894first strand
Strand 2
A
861 867parallel
Strand 3
A
832 836parallel
Strand 4
A
910 912parallel
Strand 5
A
933 934parallel
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