Analysis of interatomic Contacts of Structural Units in PDB entry:
5BNY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BNY entry

There are 6 chains in PDB entry 5BNY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	GLN 324
B	GLY 1	GLN 171
C	ASP 1	GLN 324
D	GLY 1	ILE 173
E	ASP 1	GLN 324
F	GLY 1	VAL 176

There are 27 helices in PDB entry 5BNY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	62	Right-handed alpha
Helix 2	AA2	A	64	71	Right-handed 310
Helix 3	AA3	A	97	107	Right-handed alpha
Helix 4	AA4	A	118	122	Right-handed 310
Helix 5	AA5	A	184	192	Right-handed alpha
Helix 6	AA6	B	37	59	Right-handed alpha
Helix 7	AA7	B	74	127	Right-handed alpha
Helix 8	AA8	B	145	154	Right-handed alpha
Helix 9	AA9	B	158	169	Right-handed alpha
Helix 10	AB1	C	56	63	Right-handed alpha
Helix 11	AB2	C	64	71	Right-handed 310
Helix 12	AB3	C	97	107	Right-handed alpha
Helix 13	AB4	C	118	122	Right-handed 310
Helix 14	AB5	C	184	192	Right-handed alpha
Helix 15	AB6	D	37	59	Right-handed alpha
Helix 16	AB7	D	74	127	Right-handed alpha
Helix 17	AB8	D	145	154	Right-handed alpha
Helix 18	AB9	D	158	173	Right-handed alpha
Helix 19	AC1	E	56	63	Right-handed alpha
Helix 20	AC2	E	64	71	Right-handed 310
Helix 21	AC3	E	97	107	Right-handed alpha
Helix 22	AC4	E	118	122	Right-handed 310
Helix 23	AC5	E	184	192	Right-handed alpha
Helix 24	AC6	F	37	59	Right-handed alpha
Helix 25	AC7	F	74	127	Right-handed alpha
Helix 26	AC8	F	145	154	Right-handed alpha
Helix 27	AC9	F	158	174	Right-handed alpha

There are 34 sheets in PDB entry 5BNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	36	first strand
Strand 2	B	22	28	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	B	137	140	anti-parallel
Strand 5	B	130	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	24	25	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	314	316	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	293	294	parallel
Strand 3	A	306	307	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	273	278	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	79	81	parallel
Strand 3	A	266	268	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	108	115	anti-parallel
Strand 3	A	253	259	anti-parallel
Strand 4	A	172	181	anti-parallel
Strand 5	A	248	251	anti-parallel
Strand 6	A	147	149	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	108	115	anti-parallel
Strand 3	A	253	259	anti-parallel
Strand 4	A	172	181	anti-parallel
Strand 5	A	226	234	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	151	152	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	137	first strand
Strand 2	A	140	142	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	199	202	anti-parallel
Strand 4	A	207	210	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	287	first strand
Strand 2	A	280	282	anti-parallel
Strand 3	A	300	302	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	36	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	132	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	24	25	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	314	316	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	293	294	parallel
Strand 3	C	306	307	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	273	277	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	79	81	parallel
Strand 3	C	266	268	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	108	115	anti-parallel
Strand 3	C	253	259	anti-parallel
Strand 4	C	172	181	anti-parallel
Strand 5	C	248	251	anti-parallel
Strand 6	C	147	149	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	108	115	anti-parallel
Strand 3	C	253	259	anti-parallel
Strand 4	C	172	181	anti-parallel
Strand 5	C	226	234	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	137	first strand
Strand 2	C	140	142	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	166	first strand
Strand 2	C	239	244	anti-parallel
Strand 3	C	199	202	anti-parallel
Strand 4	C	207	210	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	287	first strand
Strand 2	C	280	282	anti-parallel
Strand 3	C	300	302	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	36	first strand
Strand 2	F	22	28	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	130	132	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	24	25	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	314	316	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	293	294	parallel
Strand 3	E	306	307	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	44	first strand
Strand 2	E	273	278	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	51	first strand
Strand 2	E	79	81	parallel
Strand 3	E	266	268	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	108	115	anti-parallel
Strand 3	E	253	259	anti-parallel
Strand 4	E	172	181	anti-parallel
Strand 5	E	248	251	anti-parallel
Strand 6	E	147	149	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	108	115	anti-parallel
Strand 3	E	253	259	anti-parallel
Strand 4	E	172	181	anti-parallel
Strand 5	E	226	234	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	137	first strand
Strand 2	E	140	142	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	166	first strand
Strand 2	E	239	244	anti-parallel
Strand 3	E	199	202	anti-parallel
Strand 4	E	207	210	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	280	281	first strand
Strand 2	E	286	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BNY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BNY