Analysis of interatomic Contacts of Structural Units in PDB entry:
5BO5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BO5 entry

There are 4 chains in PDB entry 5BO5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	PRO 411
B	PRO 6	PRO 411
C	LYS 5	PRO 411
D	LYS 5	PRO 411

There are 61 helices in PDB entry 5BO5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	47	Right-handed 310
Helix 2	AA2	A	66	70	Right-handed 310
Helix 3	AA3	A	115	120	Right-handed alpha
Helix 4	AA4	A	139	153	Right-handed alpha
Helix 5	AA5	A	165	180	Right-handed alpha
Helix 6	AA6	A	181	183	Right-handed 310
Helix 7	AA7	A	195	216	Right-handed alpha
Helix 8	AA8	A	227	241	Right-handed alpha
Helix 9	AA9	A	254	264	Right-handed alpha
Helix 10	AB1	A	289	299	Right-handed alpha
Helix 11	AB2	A	306	312	Right-handed alpha
Helix 12	AB3	A	327	331	Right-handed 310
Helix 13	AB4	A	333	361	Right-handed alpha
Helix 14	AB5	A	362	365	Right-handed 310
Helix 15	AB6	A	366	383	Right-handed alpha
Helix 16	AB7	A	393	409	Right-handed alpha
Helix 17	AB8	B	66	70	Right-handed 310
Helix 18	AB9	B	115	120	Right-handed alpha
Helix 19	AC1	B	139	153	Right-handed alpha
Helix 20	AC2	B	165	180	Right-handed alpha
Helix 21	AC3	B	181	183	Right-handed 310
Helix 22	AC4	B	195	216	Right-handed alpha
Helix 23	AC5	B	227	240	Right-handed alpha
Helix 24	AC6	B	254	264	Right-handed alpha
Helix 25	AC7	B	289	299	Right-handed alpha
Helix 26	AC8	B	306	312	Right-handed alpha
Helix 27	AC9	B	327	331	Right-handed 310
Helix 28	AD1	B	333	361	Right-handed alpha
Helix 29	AD2	B	362	365	Right-handed 310
Helix 30	AD3	B	366	383	Right-handed alpha
Helix 31	AD4	B	393	409	Right-handed alpha
Helix 32	AD5	C	44	47	Right-handed 310
Helix 33	AD6	C	66	70	Right-handed 310
Helix 34	AD7	C	115	120	Right-handed alpha
Helix 35	AD8	C	139	153	Right-handed alpha
Helix 36	AD9	C	165	179	Right-handed alpha
Helix 37	AE1	C	195	216	Right-handed alpha
Helix 38	AE2	C	227	238	Right-handed alpha
Helix 39	AE3	C	254	264	Right-handed alpha
Helix 40	AE4	C	289	299	Right-handed alpha
Helix 41	AE5	C	306	312	Right-handed alpha
Helix 42	AE6	C	327	331	Right-handed 310
Helix 43	AE7	C	333	361	Right-handed alpha
Helix 44	AE8	C	362	365	Right-handed 310
Helix 45	AE9	C	366	383	Right-handed alpha
Helix 46	AF1	C	393	409	Right-handed alpha
Helix 47	AF2	D	66	70	Right-handed 310
Helix 48	AF3	D	115	120	Right-handed alpha
Helix 49	AF4	D	139	153	Right-handed alpha
Helix 50	AF5	D	165	178	Right-handed alpha
Helix 51	AF6	D	180	183	Right-handed 310
Helix 52	AF7	D	195	216	Right-handed alpha
Helix 53	AF8	D	227	239	Right-handed alpha
Helix 54	AF9	D	254	264	Right-handed alpha
Helix 55	AG1	D	289	299	Right-handed alpha
Helix 56	AG2	D	306	312	Right-handed alpha
Helix 57	AG3	D	327	331	Right-handed 310
Helix 58	AG4	D	333	361	Right-handed alpha
Helix 59	AG5	D	362	365	Right-handed 310
Helix 60	AG6	D	366	383	Right-handed alpha
Helix 61	AG7	D	393	409	Right-handed alpha

There are 22 sheets in PDB entry 5BO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	28	35	anti-parallel
Strand 3	A	38	42	anti-parallel
Strand 4	A	8	12	anti-parallel
Strand 5	A	59	60	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	90	93	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	73	74	anti-parallel
Strand 3	A	185	191	parallel
Strand 4	A	156	164	parallel
Strand 5	A	220	226	parallel
Strand 6	A	273	281	parallel
Strand 7	A	267	268	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	73	74	anti-parallel
Strand 3	A	185	191	parallel
Strand 4	A	156	164	parallel
Strand 5	A	220	226	parallel
Strand 6	A	273	281	parallel
Strand 7	A	131	134	parallel
Strand 8	A	301	305	parallel
Strand 9	A	318	325	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	248	first strand
Strand 2	A	251	252	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	28	35	anti-parallel
Strand 3	B	38	43	anti-parallel
Strand 4	B	8	12	anti-parallel
Strand 5	B	59	60	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	65	first strand
Strand 2	B	90	93	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	185	191	parallel
Strand 3	B	156	164	parallel
Strand 4	B	220	226	parallel
Strand 5	B	273	281	parallel
Strand 6	B	267	268	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	185	191	parallel
Strand 3	B	156	164	parallel
Strand 4	B	220	226	parallel
Strand 5	B	273	281	parallel
Strand 6	B	131	134	parallel
Strand 7	B	301	305	parallel
Strand 8	B	318	325	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	124	125	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	248	first strand
Strand 2	B	251	252	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	22	first strand
Strand 2	C	29	35	anti-parallel
Strand 3	C	38	42	anti-parallel
Strand 4	C	8	12	anti-parallel
Strand 5	C	59	60	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	65	first strand
Strand 2	C	90	93	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	185	191	parallel
Strand 3	C	156	164	parallel
Strand 4	C	220	226	parallel
Strand 5	C	273	281	parallel
Strand 6	C	267	268	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	185	191	parallel
Strand 3	C	156	164	parallel
Strand 4	C	220	226	parallel
Strand 5	C	273	281	parallel
Strand 6	C	131	134	parallel
Strand 7	C	301	305	parallel
Strand 8	C	318	325	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	124	125	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	248	first strand
Strand 2	C	251	252	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	12	first strand
Strand 2	D	38	42	anti-parallel
Strand 3	D	29	35	anti-parallel
Strand 4	D	21	22	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	65	first strand
Strand 2	D	90	93	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	D	185	191	parallel
Strand 3	D	156	164	parallel
Strand 4	D	220	226	parallel
Strand 5	D	273	281	parallel
Strand 6	D	267	268	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	D	185	191	parallel
Strand 3	D	156	164	parallel
Strand 4	D	220	226	parallel
Strand 5	D	273	281	parallel
Strand 6	D	131	134	parallel
Strand 7	D	301	305	parallel
Strand 8	D	318	325	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	248	first strand
Strand 2	D	251	252	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BO5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BO5