Analysis of interatomic Contacts of Structural Units in PDB entry:
5BOE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BOE entry

There are 2 chains in PDB entry 5BOE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 433
B
 MET 1ASP 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5BOE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 62Right-handed 310
Helix 2
AA2
A
64 74Right-handed alpha
Helix 3
AA3
A
74 82Right-handed alpha
Helix 4
AA4
A
88 101Right-handed alpha
Helix 5
AA5
A
109 129Right-handed alpha
Helix 6
AA6
A
131 138Right-handed alpha
Helix 7
AA7
A
155 158Right-handed 310
Helix 8
AA8
A
176 198Right-handed alpha
Helix 9
AA9
A
216 231Right-handed alpha
Helix 10
AB1
A
246 249Right-handed 310
Helix 11
AB2
A
258 263Right-handed alpha
Helix 12
AB3
A
270 285Right-handed alpha
Helix 13
AB4
A
298 310Right-handed alpha
Helix 14
AB5
A
324 335Right-handed alpha
Helix 15
AB6
A
343 348Right-handed alpha
Helix 16
AB7
A
349 363Right-handed alpha
Helix 17
AB8
A
379 388Right-handed alpha
Helix 18
AB9
A
400 418Right-handed alpha
Helix 19
AC1
A
419 421Right-handed 310
Helix 20
AC2
A
425 429Right-handed 310
Helix 21
AC3
B
58 62Right-handed 310
Helix 22
AC4
B
64 74Right-handed alpha
Helix 23
AC5
B
74 83Right-handed alpha
Helix 24
AC6
B
88 101Right-handed alpha
Helix 25
AC7
B
109 129Right-handed alpha
Helix 26
AC8
B
131 138Right-handed alpha
Helix 27
AC9
B
155 158Right-handed 310
Helix 28
AD1
B
176 198Right-handed alpha
Helix 29
AD2
B
216 231Right-handed alpha
Helix 30
AD3
B
246 249Right-handed 310
Helix 31
AD4
B
258 263Right-handed alpha
Helix 32
AD5
B
270 285Right-handed alpha
Helix 33
AD6
B
298 310Right-handed alpha
Helix 34
AD7
B
324 335Right-handed alpha
Helix 35
AD8
B
343 348Right-handed alpha
Helix 36
AD9
B
349 363Right-handed alpha
Helix 37
AE1
B
379 388Right-handed alpha
Helix 38
AE2
B
400 418Right-handed alpha
Helix 39
AE3
B
419 421Right-handed 310
Helix 40
AE4
B
425 429Right-handed 310
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There are 8 sheets in PDB entry 5BOE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 13first strand
Strand 2
A
19 27anti-parallel
Strand 3
A
32 36anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
422 423parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
392 394parallel
Strand 3
A
366 370parallel
Strand 4
A
339 342parallel
Strand 5
A
314 317parallel
Strand 6
A
287 291parallel
Strand 7
A
240 244parallel
Strand 8
A
166 170anti-parallel
Strand 9
A
149 153anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
255 257anti-parallel
Strand 3
A
268 269anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 13first strand
Strand 2
B
19 27anti-parallel
Strand 3
B
32 36anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
422 423parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 147first strand
Strand 2
B
392 394parallel
Strand 3
B
366 370parallel
Strand 4
B
339 342parallel
Strand 5
B
314 317parallel
Strand 6
B
287 291parallel
Strand 7
B
240 244parallel
Strand 8
B
166 170anti-parallel
Strand 9
B
149 153anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
255 257anti-parallel
Strand 3
B
268 269anti-parallel
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